From 2945faefecf047938b88f7a5a1b3d625f3d3f400 Mon Sep 17 00:00:00 2001 From: Nan Xiao Date: Sun, 17 Mar 2024 19:23:07 -0400 Subject: [PATCH] Remove `scale_name` from `discrete_scale()` calls due to deprecation in ggplot2 3.5.0 --- R/discrete-aaas.R | 4 ++-- R/discrete-cosmic.R | 4 ++-- R/discrete-d3.R | 4 ++-- R/discrete-flatui.R | 4 ++-- R/discrete-frontiers.R | 4 ++-- R/discrete-futurama.R | 4 ++-- R/discrete-igv.R | 4 ++-- R/discrete-jama.R | 4 ++-- R/discrete-jco.R | 4 ++-- R/discrete-lancet.R | 4 ++-- R/discrete-locuszoom.R | 4 ++-- R/discrete-nejm.R | 4 ++-- R/discrete-npg.R | 4 ++-- R/discrete-rickandmorty.R | 4 ++-- R/discrete-simpsons.R | 4 ++-- R/discrete-startrek.R | 4 ++-- R/discrete-tron.R | 4 ++-- R/discrete-uchicago.R | 4 ++-- R/discrete-ucscgb.R | 4 ++-- 19 files changed, 38 insertions(+), 38 deletions(-) diff --git a/R/discrete-aaas.R b/R/discrete-aaas.R index c339cd2..fe5a0fe 100644 --- a/R/discrete-aaas.R +++ b/R/discrete-aaas.R @@ -76,7 +76,7 @@ pal_aaas <- function(palette = c("default"), alpha = 1) { #' scale_fill_aaas() scale_color_aaas <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "aaas", pal_aaas(palette, alpha), ...) + discrete_scale("colour", palette = pal_aaas(palette, alpha), ...) } #' @export scale_colour_aaas @@ -88,5 +88,5 @@ scale_colour_aaas <- scale_color_aaas #' @rdname scale_aaas scale_fill_aaas <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "aaas", pal_aaas(palette, alpha), ...) + discrete_scale("fill", palette = pal_aaas(palette, alpha), ...) } diff --git a/R/discrete-cosmic.R b/R/discrete-cosmic.R index dd75b7b..585598e 100644 --- a/R/discrete-cosmic.R +++ b/R/discrete-cosmic.R @@ -87,7 +87,7 @@ scale_color_cosmic <- function( palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "cosmic", pal_cosmic(palette, alpha), ...) + discrete_scale("colour", palette = pal_cosmic(palette, alpha), ...) } #' @export scale_colour_cosmic @@ -101,5 +101,5 @@ scale_fill_cosmic <- function( palette = c("hallmarks_light", "hallmarks_dark", "signature_substitutions"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "cosmic", pal_cosmic(palette, alpha), ...) + discrete_scale("fill", palette = pal_cosmic(palette, alpha), ...) } diff --git a/R/discrete-d3.R b/R/discrete-d3.R index 24848f0..fc89a82 100644 --- a/R/discrete-d3.R +++ b/R/discrete-d3.R @@ -93,7 +93,7 @@ pal_d3 <- function(palette = c("category10", "category20", "category20b", "categ #' p2 + scale_fill_d3(palette = "category20c") scale_color_d3 <- function(palette = c("category10", "category20", "category20b", "category20c"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "d3", pal_d3(palette, alpha), ...) + discrete_scale("colour", palette = pal_d3(palette, alpha), ...) } #' @export scale_colour_d3 @@ -105,5 +105,5 @@ scale_colour_d3 <- scale_color_d3 #' @rdname scale_d3 scale_fill_d3 <- function(palette = c("category10", "category20", "category20b", "category20c"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "d3", pal_d3(palette, alpha), ...) + discrete_scale("fill", palette = pal_d3(palette, alpha), ...) } diff --git a/R/discrete-flatui.R b/R/discrete-flatui.R index bc59235..4554b9c 100644 --- a/R/discrete-flatui.R +++ b/R/discrete-flatui.R @@ -86,7 +86,7 @@ pal_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1 #' p2 + scale_fill_flatui(palette = "aussie") scale_color_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "flatui", pal_flatui(palette, alpha), ...) + discrete_scale("colour", palette = pal_flatui(palette, alpha), ...) } #' @export scale_colour_flatui @@ -98,5 +98,5 @@ scale_colour_flatui <- scale_color_flatui #' @rdname scale_flatui scale_fill_flatui <- function(palette = c("default", "flattastic", "aussie"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "flatui", pal_flatui(palette, alpha), ...) + discrete_scale("fill", palette = pal_flatui(palette, alpha), ...) } diff --git a/R/discrete-frontiers.R b/R/discrete-frontiers.R index 2bcfea7..603744f 100644 --- a/R/discrete-frontiers.R +++ b/R/discrete-frontiers.R @@ -79,7 +79,7 @@ pal_frontiers <- function(palette = c("default"), alpha = 1) { #' scale_fill_frontiers() scale_color_frontiers <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "frontiers", pal_frontiers(palette, alpha), ...) + discrete_scale("colour", palette = pal_frontiers(palette, alpha), ...) } #' @export scale_colour_frontiers @@ -91,5 +91,5 @@ scale_colour_frontiers <- scale_color_frontiers #' @rdname scale_frontiers scale_fill_frontiers <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "frontiers", pal_frontiers(palette, alpha), ...) + discrete_scale("fill", palette = pal_frontiers(palette, alpha), ...) } diff --git a/R/discrete-futurama.R b/R/discrete-futurama.R index 28e8426..683bb46 100644 --- a/R/discrete-futurama.R +++ b/R/discrete-futurama.R @@ -74,7 +74,7 @@ pal_futurama <- function(palette = c("planetexpress"), alpha = 1) { #' scale_fill_futurama() scale_color_futurama <- function(palette = c("planetexpress"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "futurama", pal_futurama(palette, alpha), ...) + discrete_scale("colour", palette = pal_futurama(palette, alpha), ...) } #' @export scale_colour_futurama @@ -86,5 +86,5 @@ scale_colour_futurama <- scale_color_futurama #' @rdname scale_futurama scale_fill_futurama <- function(palette = c("planetexpress"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "futurama", pal_futurama(palette, alpha), ...) + discrete_scale("fill", palette = pal_futurama(palette, alpha), ...) } diff --git a/R/discrete-igv.R b/R/discrete-igv.R index 1bea09f..096b62d 100644 --- a/R/discrete-igv.R +++ b/R/discrete-igv.R @@ -89,7 +89,7 @@ pal_igv <- function(palette = c("default", "alternating"), alpha = 1) { #' ) scale_color_igv <- function(palette = c("default", "alternating"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "igv", pal_igv(palette, alpha), ...) + discrete_scale("colour", palette = pal_igv(palette, alpha), ...) } #' @export scale_colour_igv @@ -101,5 +101,5 @@ scale_colour_igv <- scale_color_igv #' @rdname scale_igv scale_fill_igv <- function(palette = c("default", "alternating"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "igv", pal_igv(palette, alpha), ...) + discrete_scale("fill", palette = pal_igv(palette, alpha), ...) } diff --git a/R/discrete-jama.R b/R/discrete-jama.R index ea22566..5bfa643 100644 --- a/R/discrete-jama.R +++ b/R/discrete-jama.R @@ -75,7 +75,7 @@ pal_jama <- function(palette = c("default"), alpha = 1) { #' scale_fill_jama() scale_color_jama <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "jama", pal_jama(palette, alpha), ...) + discrete_scale("colour", palette = pal_jama(palette, alpha), ...) } #' @export scale_colour_jama @@ -87,5 +87,5 @@ scale_colour_jama <- scale_color_jama #' @rdname scale_jama scale_fill_jama <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "jama", pal_jama(palette, alpha), ...) + discrete_scale("fill", palette = pal_jama(palette, alpha), ...) } diff --git a/R/discrete-jco.R b/R/discrete-jco.R index def588e..f987737 100644 --- a/R/discrete-jco.R +++ b/R/discrete-jco.R @@ -74,7 +74,7 @@ pal_jco <- function(palette = c("default"), alpha = 1) { #' scale_fill_jco() scale_color_jco <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "jco", pal_jco(palette, alpha), ...) + discrete_scale("colour", palette = pal_jco(palette, alpha), ...) } #' @export scale_colour_jco @@ -86,5 +86,5 @@ scale_colour_jco <- scale_color_jco #' @rdname scale_jco scale_fill_jco <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "jco", pal_jco(palette, alpha), ...) + discrete_scale("fill", palette = pal_jco(palette, alpha), ...) } diff --git a/R/discrete-lancet.R b/R/discrete-lancet.R index f4bbee5..f48d0d0 100644 --- a/R/discrete-lancet.R +++ b/R/discrete-lancet.R @@ -75,7 +75,7 @@ pal_lancet <- function(palette = c("lanonc"), alpha = 1) { #' scale_fill_lancet() scale_color_lancet <- function(palette = c("lanonc"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "lancet", pal_lancet(palette, alpha), ...) + discrete_scale("colour", palette = pal_lancet(palette, alpha), ...) } #' @export scale_colour_lancet @@ -87,5 +87,5 @@ scale_colour_lancet <- scale_color_lancet #' @rdname scale_lancet scale_fill_lancet <- function(palette = c("lanonc"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "lancet", pal_lancet(palette, alpha), ...) + discrete_scale("fill", palette = pal_lancet(palette, alpha), ...) } diff --git a/R/discrete-locuszoom.R b/R/discrete-locuszoom.R index 1479c3e..dfd4773 100644 --- a/R/discrete-locuszoom.R +++ b/R/discrete-locuszoom.R @@ -79,7 +79,7 @@ pal_locuszoom <- function(palette = c("default"), alpha = 1) { #' scale_fill_locuszoom() scale_color_locuszoom <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "locuszoom", pal_locuszoom(palette, alpha), ...) + discrete_scale("colour", palette = pal_locuszoom(palette, alpha), ...) } #' @export scale_colour_locuszoom @@ -91,5 +91,5 @@ scale_colour_locuszoom <- scale_color_locuszoom #' @rdname scale_locuszoom scale_fill_locuszoom <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "locuszoom", pal_locuszoom(palette, alpha), ...) + discrete_scale("fill", palette = pal_locuszoom(palette, alpha), ...) } diff --git a/R/discrete-nejm.R b/R/discrete-nejm.R index 465ca41..d6849bd 100644 --- a/R/discrete-nejm.R +++ b/R/discrete-nejm.R @@ -75,7 +75,7 @@ pal_nejm <- function(palette = c("default"), alpha = 1) { #' scale_fill_nejm() scale_color_nejm <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "nejm", pal_nejm(palette, alpha), ...) + discrete_scale("colour", palette = pal_nejm(palette, alpha), ...) } #' @export scale_colour_nejm @@ -87,5 +87,5 @@ scale_colour_nejm <- scale_color_nejm #' @rdname scale_nejm scale_fill_nejm <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "nejm", pal_nejm(palette, alpha), ...) + discrete_scale("fill", palette = pal_nejm(palette, alpha), ...) } diff --git a/R/discrete-npg.R b/R/discrete-npg.R index babca70..24d1789 100644 --- a/R/discrete-npg.R +++ b/R/discrete-npg.R @@ -75,7 +75,7 @@ pal_npg <- function(palette = c("nrc"), alpha = 1) { #' scale_fill_npg() scale_color_npg <- function(palette = c("nrc"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "npg", pal_npg(palette, alpha), ...) + discrete_scale("colour", palette = pal_npg(palette, alpha), ...) } #' @export scale_colour_npg @@ -87,5 +87,5 @@ scale_colour_npg <- scale_color_npg #' @rdname scale_npg scale_fill_npg <- function(palette = c("nrc"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "npg", pal_npg(palette, alpha), ...) + discrete_scale("fill", palette = pal_npg(palette, alpha), ...) } diff --git a/R/discrete-rickandmorty.R b/R/discrete-rickandmorty.R index cd0c1c6..ba7d4cc 100644 --- a/R/discrete-rickandmorty.R +++ b/R/discrete-rickandmorty.R @@ -74,7 +74,7 @@ pal_rickandmorty <- function(palette = c("schwifty"), alpha = 1) { #' scale_fill_rickandmorty() scale_color_rickandmorty <- function(palette = c("schwifty"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "rickandmorty", pal_rickandmorty(palette, alpha), ...) + discrete_scale("colour", palette = pal_rickandmorty(palette, alpha), ...) } #' @export scale_colour_rickandmorty @@ -86,5 +86,5 @@ scale_colour_rickandmorty <- scale_color_rickandmorty #' @rdname scale_rickandmorty scale_fill_rickandmorty <- function(palette = c("schwifty"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "rickandmorty", pal_rickandmorty(palette, alpha), ...) + discrete_scale("fill", palette = pal_rickandmorty(palette, alpha), ...) } diff --git a/R/discrete-simpsons.R b/R/discrete-simpsons.R index 1a78e79..07c5b68 100644 --- a/R/discrete-simpsons.R +++ b/R/discrete-simpsons.R @@ -74,7 +74,7 @@ pal_simpsons <- function(palette = c("springfield"), alpha = 1) { #' scale_fill_simpsons() scale_color_simpsons <- function(palette = c("springfield"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "simpsons", pal_simpsons(palette, alpha), ...) + discrete_scale("colour", palette = pal_simpsons(palette, alpha), ...) } #' @export scale_colour_simpsons @@ -86,5 +86,5 @@ scale_colour_simpsons <- scale_color_simpsons #' @rdname scale_simpsons scale_fill_simpsons <- function(palette = c("springfield"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "simpsons", pal_simpsons(palette, alpha), ...) + discrete_scale("fill", palette = pal_simpsons(palette, alpha), ...) } diff --git a/R/discrete-startrek.R b/R/discrete-startrek.R index 82ec4b4..e7572d1 100644 --- a/R/discrete-startrek.R +++ b/R/discrete-startrek.R @@ -74,7 +74,7 @@ pal_startrek <- function(palette = c("uniform"), alpha = 1) { #' scale_fill_startrek() scale_color_startrek <- function(palette = c("uniform"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "startrek", pal_startrek(palette, alpha), ...) + discrete_scale("colour", palette = pal_startrek(palette, alpha), ...) } #' @export scale_colour_startrek @@ -86,5 +86,5 @@ scale_colour_startrek <- scale_color_startrek #' @rdname scale_startrek scale_fill_startrek <- function(palette = c("uniform"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "startrek", pal_startrek(palette, alpha), ...) + discrete_scale("fill", palette = pal_startrek(palette, alpha), ...) } diff --git a/R/discrete-tron.R b/R/discrete-tron.R index 65bd3cf..c6d0526 100644 --- a/R/discrete-tron.R +++ b/R/discrete-tron.R @@ -81,7 +81,7 @@ pal_tron <- function(palette = c("legacy"), alpha = 1) { #' scale_fill_tron() scale_color_tron <- function(palette = c("legacy"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "tron", pal_tron(palette, alpha), ...) + discrete_scale("colour", palette = pal_tron(palette, alpha), ...) } #' @export scale_colour_tron @@ -93,5 +93,5 @@ scale_colour_tron <- scale_color_tron #' @rdname scale_tron scale_fill_tron <- function(palette = c("legacy"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "tron", pal_tron(palette, alpha), ...) + discrete_scale("fill", palette = pal_tron(palette, alpha), ...) } diff --git a/R/discrete-uchicago.R b/R/discrete-uchicago.R index 1c144c3..cc24fc6 100644 --- a/R/discrete-uchicago.R +++ b/R/discrete-uchicago.R @@ -88,7 +88,7 @@ pal_uchicago <- function(palette = c("default", "light", "dark"), alpha = 1) { #' p2 + scale_fill_uchicago(palette = "dark") scale_color_uchicago <- function(palette = c("default", "light", "dark"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "uchicago", pal_uchicago(palette, alpha), ...) + discrete_scale("colour", palette = pal_uchicago(palette, alpha), ...) } #' @export scale_colour_uchicago @@ -100,5 +100,5 @@ scale_colour_uchicago <- scale_color_uchicago #' @rdname scale_uchicago scale_fill_uchicago <- function(palette = c("default", "light", "dark"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "uchicago", pal_uchicago(palette, alpha), ...) + discrete_scale("fill", palette = pal_uchicago(palette, alpha), ...) } diff --git a/R/discrete-ucscgb.R b/R/discrete-ucscgb.R index b0f7d08..86ff1c6 100644 --- a/R/discrete-ucscgb.R +++ b/R/discrete-ucscgb.R @@ -74,7 +74,7 @@ pal_ucscgb <- function(palette = c("default"), alpha = 1) { #' scale_fill_ucscgb() scale_color_ucscgb <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("colour", "ucscgb", pal_ucscgb(palette, alpha), ...) + discrete_scale("colour", palette = pal_ucscgb(palette, alpha), ...) } #' @export scale_colour_ucscgb @@ -86,5 +86,5 @@ scale_colour_ucscgb <- scale_color_ucscgb #' @rdname scale_ucscgb scale_fill_ucscgb <- function(palette = c("default"), alpha = 1, ...) { palette <- match.arg(palette) - discrete_scale("fill", "ucscgb", pal_ucscgb(palette, alpha), ...) + discrete_scale("fill", palette = pal_ucscgb(palette, alpha), ...) }