liftr-minimal.Rmd

---
title: "A Minimal Example for liftr"
author: "Nan Xiao <<me@nanx.me>>"
date: "`r Sys.Date()`"
output:
  tufte::tufte_html: default
liftr:
  from: "rocker/r-base:latest"
  maintainer: "Nan Xiao"
  email: "me@nanx.me"
  cran:
    - tufte
    - kernlab
---

## A spectral clustering example

This is an R Markdown document that could be rendered under a Docker container using `liftr`. The document requires the `specc()` function in the `kernlab` package from CRAN to perform a simple spectral clustering:

```{r specc, fig.cap = 'Spectral clustering of spirals data.'}
library("kernlab")
data(spirals)
set.seed(42)
sc = specc(spirals, centers = 2)
print(sc)
plot(spirals, col = sc)
```

## Options of liftr in this document

The document front-matter metadata includes the options for `liftr`, which is used for dockerizing the document:

```{r liftrmeta}
rmarkdown::metadata$liftr
```

## Session information

The R session information for compiling this document is shown below.

```{r session}
sessionInfo()
```