Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

only install pandoc if it is not already present #12

Closed
dtenenba opened this issue Jul 28, 2015 · 2 comments
Closed

only install pandoc if it is not already present #12

dtenenba opened this issue Jul 28, 2015 · 2 comments

Comments

@dtenenba
Copy link

@dtenenba dtenenba commented Jul 28, 2015

The Bioconductor Docker images are based on rocker/rstudio which means they already have pandoc installed. liftr tries to install pandoc on the container and this fails. The dockerfile should only attempt to install pandoc if it is not already installed. Thanks.

@nanxstats
Copy link
Owner

@nanxstats nanxstats commented Jul 30, 2015

@dtenenba - confirmed. Thanks Dan. This will be soon fixed in the development version on GitHub.

@nanxstats
Copy link
Owner

@nanxstats nanxstats commented Jul 31, 2015

@dtenenba - hi Dan, this issue has been fixed in the current version (v0.2) on GitHub. Try devtools::install_github("road2stat/liftr") to install it. We've also submitted v0.2 to CRAN, waiting to be reviewed. (update: v0.2 is on CRAN now.)

In v0.2, if rocker/rstudio or one of the Bioconductor images is specified, Pandoc will not be installed. We also provided a new option pandoc in the liftr metadata to allow users to control whether to install Pandoc or not.

@nanxstats nanxstats closed this Oct 25, 2015
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Linked pull requests

Successfully merging a pull request may close this issue.

None yet
2 participants