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Error: With R version 3.5 or greater, install Bioconductor packages using BiocManager #45

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lubianat opened this issue Jun 18, 2019 · 1 comment

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@lubianat
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@lubianat lubianat commented Jun 18, 2019

Hey,

BioConductor has updated its way of installing packages, which caused an incompatibility problem with current liftr version.

The command '/bin/sh -c Rscript -e "source('http://bioconductor.org/biocLite.R');biocLite(c('FCBF/1.2.2'))"' returned a non-zero code: 1"

The issue is at : https://github.com/nanxstats/liftr/blob/4271ec88c36c57049b2ce93461cff92c412146aa/inst/templates/pkg-bioc.Rmd

I will try to work on a solution and send a pr.

Best,
Tiago

@nanxstats
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@nanxstats nanxstats commented Jun 18, 2019

Fixed by #46

@nanxstats nanxstats closed this Jun 18, 2019
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