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A preprocessing tool to merge gene count files
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README.md

GeneCountMerger

NOTE: first column must contain the genes. If the gene columns do not match in all files, this tool will not work


Online/Demo:

You can try it online at http://nasqar.abudhabi.nyu.edu/GeneCountMerger

Features

  • Merge individual sample count files. See Sample Input Files below for more details
  • Or merge multiple matrices
  • Convert ensembl gene IDs to gene names
    • Option to choose from available genome/versions
    • If genome/version is not available in the options and you have a .gtf file for your genome follow these instructions.
  • Option to add pseudocounts (+1)
  • Download merged counts file in .csv format
  • Transcriptome Analysis (Optional) after merging your counts:
    • Use our Seurat Wizard to carry out single-cell RNA analysis
    • Use DESeq2 or START apps to carry out bulk RNA analysis

Screenshot

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