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This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
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README.md

#1589F0 For Seurat v3 (alpha) see SeuratV3Wizard

SeuratWizard: R Shiny interface for Seurat single-cell analysis library

Online/Demo:

You can try it online at http://nasqar.abudhabi.nyu.edu/SeuratWizard

Run using docker (Recommended):

docker run -p 80:80 aymanm/seuratwizard

This will run on port 80


Local Install:

devtools::install_github("nasqar/SeuratWizard")

Run:

library(SeuratWizard)
SeuratWizard()

This will run on http://0.0.0.0:1234/ by default

To run on specific ip/port:

ip = '127.0.0.1'
portNumber = 5555
SeuratWizard(ip,portNumber)

This will run on http://127.0.0.1:5555/

Screenshots:

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Acknowledgements:

  1. Rahul Satija, Andrew Butler and Paul Hoffman (2017). Seurat: Tools for Single Cell Genomics. R package version 2.2.1. https://CRAN.R-project.org/package=Seurat

  2. Satija Lab

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