This repository contains code for generating the figures in the manuscript Earthmover-Based Manifold Learning for Analyzing Molecular Conformation Spaces by Nathan Zelesko, Amit Moscovich, Joe Kileel, and Amit Singer.

If you have the prerequsities, you can simply run './produce_all_figures.py' to generate the figures in the paper. This will take a few hours.

Prerequisites:

• Python 3 with SciPy and scikit-learn. I recommend the Anaconda python distribution.
• The PyWavelets package (included in Anaconda)
• The mrcfile Python module, to install it run pip install mrcfile.

For any questions, email nathan@zelesko.com or amit@moscovich.org.