From b351c04db779c6a8eb8da41ad3eb00554d880a75 Mon Sep 17 00:00:00 2001
From: Nitin Bhushan <bhushan.nitin@posteo.net>
Date: Mon, 10 Jul 2023 17:50:06 +0000
Subject: [PATCH] added make file to simplify local dev runs

---
 Makefile       | 41 +++++++++++++++++++++++++++++++++++++++++
 pyproject.toml |  3 ++-
 2 files changed, 43 insertions(+), 1 deletion(-)
 create mode 100644 Makefile

diff --git a/Makefile b/Makefile
new file mode 100644
index 0000000..b186bfd
--- /dev/null
+++ b/Makefile
@@ -0,0 +1,41 @@
+initialize_git:
+	@echo "Initializing git..."
+	git init
+
+install:
+	@echo "Installing..."
+	poetry install
+
+activate:
+	@echo "Activating virtual environment"
+	poetry shell
+
+setup_precommit:
+	@echo "Setting up pre-commit"
+	pre-commit install
+
+setup: initialize_git install activate setup_precommit
+
+test:
+	@echo "Running tests"
+	poetry run pytest
+
+testcov:
+	@echo "Generating test coverage"
+	poetry run pytest --cov=sequence_modelling tests/
+
+format:
+	@echo "Formatting code using Black"
+	poetry run black
+
+precommit:
+	@echo "Running Pre-commit"
+	poetry run pre-commit run --all-files
+
+## Delete all compiled Python files
+clean:
+	@echo "Cleaning up the repo"
+	find . -type f -name "*.py[co]" -delete
+	find . -type f -name ".coverage" -delete
+	find . -type d -name "__pycache__" -delete
+	rm -rf .pytest_cache
diff --git a/pyproject.toml b/pyproject.toml
index e97f0b7..d1dd7da 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "sequence_modelling"
-version = "0.1.3"
+version = "0.1.4"
 description = "sequence modelling using HMMs"
 authors = ["Nitin Bhushan <bhushan.nitin@posteo.net>"]
 readme = "README.md"
@@ -14,6 +14,7 @@ scipy = "^1.10.1"
 Sphinx = { version = "4.2.0", optional = true }
 sphinx-rtd-theme = { version = "1.0.0", optional = true }
 sphinxcontrib-napoleon = { version = "0.7", optional = true }
+pytest-cov = "^4.1.0"
 
 [tool.poetry.group.dev.dependencies]
 matplotlib = "^3.7.0"