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Trying to use idr tool with this command:
/share/apps/idr/5fbd010/bin/idr
--samples
BRD2_minus_JQ1_1.MACS2_peaks.narrowPeak.IDR_ready.temp.Peak BRD2_minus_JQ1_2.MACS2_peaks.narrowPeak.IDR_ready.temp.Peak
--input-file-type narrowPeak
--rank p.value
--output-file test.merged.idr.bed
--soft-idr-threshold 0.05
--plot
--use-nonoverlapping-peaks
--peak-merge-method min
--verbose
Hello,
Trying to use idr tool with this command:
/share/apps/idr/5fbd010/bin/idr
--samples
BRD2_minus_JQ1_1.MACS2_peaks.narrowPeak.IDR_ready.temp.Peak BRD2_minus_JQ1_2.MACS2_peaks.narrowPeak.IDR_ready.temp.Peak
--input-file-type narrowPeak
--rank p.value
--output-file test.merged.idr.bed
--soft-idr-threshold 0.05
--plot
--use-nonoverlapping-peaks
--peak-merge-method min
--verbose
Getting the following error:
Please see attached file:
TKXL.test.IDR.e293603.txt
It works fine without any errors if I drop the --use-nonoverlapping-peaks option.
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