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#!/usr/bin/env cwl-runner
cwlVersion: v1.0
class: Workflow
label: "Filter Protein Alignments I"
inputs:
asn_cache: Directory
uniColl_asn_cache: Directory
blast_full: File
prosplign: File
outputs:
align:
type: File
outputSource: align_filter/align
align_non_match:
type: File
outputSource: align_filter/align_non_match
steps:
cat:
run: cat.cwl
in:
file_in_1: blast_full
file_in_2: prosplign
out: [ file_out ]
align_filter:
run: align_filter.cwl
in:
asn_cache: asn_cache
uniColl_asn_cache: uniColl_asn_cache
file_in: cat/file_out
out: [ align, align_non_match ]
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