TRGAted is an interactive web application that provides a graphical user interface combining survival information and reverse-phase protein array data from the Cancer Genome Atlas. Cloud-based TRGAted is run using the R Shiny Server see the TRGAted Application.
TRGAted is provided under a free-of-charge, open-source license (A-GPL3). All we require is that you cite/attribute the following in any work that benefits from this code or application.
If using the TRGAted app or derivative work, please cite our F1000research article: TRGAted: A web tool for survival analysis using protein data in the Cancer Genome Atlas. Link Here.
Running TRGAted as a Local Session
While it is possible to host the server "back end" somewhere so that users only need to point their web browser to a link, it is also possible to launch both the back and front "ends" on your local machine. The server back end will be an R session on your own machine, while the front end is your web browser, pointed to the appropriate local URL.
Make sure that you first have installed the latest version of R.
Download repository and open .R file in R Studio. launch TRGAted App.
TRGAted relies on the following packages, which should be installed if running the code locally.
install.packages("shiny") install.packages("ggplots2") install.packages("broom") install.packages("survMisc") install.packages("survminer") install.packages("shinythemes") install.packages("DT") install.packages("dplyr") install.packages("ggrepel") install.packages("reshape2")