Source code for MSI Detection in tumor samples.
pip install clin-msi
conda from Bioconda channel
conda install -c bioconda clin-msi
How to use clin-msi?
clin-msi <command> [options]
Train your model by supplying BAM files with their associated MSI status
Predict the MSI status of a BAM by comparing it to your trained model
The package is managed using
curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python - source $HOME/.poetry/env
Install projects dependencies
poetry install -v