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Structural Motifs Using Random Fields, stochastic search implementation in Haskell

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SearchStrategies
data
otherdocs
scripts
testing
.gitignore
Beta.hs
CommandArgs.hs
Constants.hs
ConstantsGen.hs
DEPENDENCIES
DevNotes.txt
Fasta.hs
HmmPlus.hs
Main.hs
NonUniform.hs
PsiPred.hs
QCTesting.hs
README
RunPsiPred.hs
Score.hs
SearchModel.hs
SearchStrategy.hs
Setup.hs
ShowAlignment.hs
Shuffle.hs
StochasticSearch.hs
TODO
Viterbi.hs
Wrappers.hs
mkfile
mrfy.cabal
notes.txt
test.hmm+
test.ss2

README

This is a Haskell implementation of the SMURF2 algorithm (stochastic search-based).

Docs for cmdargs (which is very nice):
  http://hackage.haskell.org/packages/archive/cmdargs/latest/doc/html/System-Console-CmdArgs-Implicit.html

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