/MRFy

Structural Motifs Using Random Fields, stochastic search implementation in Haskell
  1. Haskell 96.0%
  2. Ruby 3.8%
  3. Other 0.2%
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Control/Monad
SearchStrategies
data
otherdocs
scripts
testing
.gitignore
BENCH
Beta.hs
BetaProps.hs
CommandArgs.hs
Constants.hs
ConstantsGen.hs
DEPENDENCIES
DevNotes.txt
Fasta.hs
FileOps.hs
HMMArby.hs
HMMPlus.hs
HMMProps.hs
HyperTriangles.hs
LazySearchModel.hs
MRFTypes.hs
Main.hs
NonUniform.hs
ParRandom.hs
ParsecHelper.hs
Perturb.hs
PrefixMemo.hs
PsiPred.hs
README
RunPsiPred.hs
Score.hs
SearchStrategy.hs
Setup.hs
ShowAlignment.hs
Shuffle.hs
StochasticSearch.hs
TODO
V2.hs
Viterbi.hs
Wrappers.hs
ghc-opts
mkfile
mrfy.cabal
notes.txt
session.vim
sources.txt
test.hmm+
test.ss2

README 

This is a Haskell implementation of the SMURF2 algorithm (stochastic search-based).

Docs for cmdargs (which is very nice):
  http://hackage.haskell.org/packages/archive/cmdargs/latest/doc/html/System-Console-CmdArgs-Implicit.html