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NOVOPlasty: The Organelle Assembler
Version 4.3
Author: Nicolas Dierckxsens, (c) 2015-2020
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Input parameters from the configuration file:   *** Verify if everything is correct ***

Project:
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Project name          = Bg_P7_F0199_83
Type                  = chloro
Genome range          = 140000-160000
K-mer                 = 27
Max memory            = 
Extended log          = 1
Save assembled reads  = no
Seed Input            = C:\bactris_NOVOPlasty\Bactrisgasipaes205ref.fasta
Extend seed directly  = no
Reference sequence    = C:\bactris_NOVOPlasty\Bactrisgasipaes205ref.fasta
Variance detection    = yes
Chloroplast sequence  = 

Dataset 1:
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Read Length           = 250
Insert size           = 300
Platform              = illumina
Single/Paired         = PE
Combined reads        = 
Forward reads         = C:\bactris_NOVOPlasty\P7_S2_L001_R1_001.fastq
Reverse reads         = C:\bactris_NOVOPlasty\P7_S2_L001_R2_001.fastq
Store Hash            = 

Heteroplasmy:
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Heteroplasmy          = 
HP exclude list       = 
PCR-free              = 

Optional:
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Insert size auto      = yes
Use Quality Scores    = 
Output path           = 

Subsampled fraction: 99.87 %
Forward reads without pair: 564
Reverse reads without pair: 325

Retrieve Seed...

Initial read retrieved successfully: CTTATACTTATTTCTAATACTTATACTTATTTTATTACTTATGTGTTGTGTGCAAAACACTATTGAATCAAACAATGGAGCAATACCCAATATCTTGTTTTAGTTGGGTATTGCTCCATTCCTTCAACGATTCATATACACTAAGACAAAAGTCTTATCCATTTGTAGATGGAACTTCGACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTAGCACGA

Start Assembly...