• Processing many samples at once
• In this tutorial we assume the following:
• 0. Getting data
• 1. Creating a paired dataset collection
• 2.0. Using collections
• 3. Processing collection as a single entity
• 3.0. Ensuring consistency of BAM dataset
• 3.1. Retaining 'proper pairs'
• 3.2. Merging collection into a single dataset
• 4. Let's look at what we've got!
• 5. We did not fake this:
• 6. If things don't work...
• The End