Project Nemaload
Extracting the 3D pose of a worm (as a spline) from a confocal stack, and misc. related code
A browser-based HDF5 image viewer
Signal extraction toolchain
Utilities for the computational workflow
Theory of NEMALOAD: what kind of mathematical objects are under scientific consideration, and how can we learn about them through experiment?
CElegansNeuroML
Forked from openworm/CElegansNeuroMLNeuroML based C elegans model, contained in a neuroConstruct project
Blender2NeuroML
Forked from openworm/Blender2NeuroMLConversion script to bring neuron models drawn in Blender into NeuroML format
PoBAM paper
A little system of Izhikevich neurons to test system-identification approaches on.
Simple test task for compeval
Computation Evaluator
Docker - the Linux container runtime
GUI for a light field microscope