SC GM-WM segmentation with continuous cuts on AMIRA images
MATLAB code of a spinal cord (SC) gray matter-white matter (GM-WM) segmentation algorithm that uses anisotropic continuous cuts in combination with CSF-WM and GM appearance models on images of a special MR sequence called averaged magnetization inversion recovery acquisitions (AMIRA). If you use this algorithm, please consider citing:
C. Tsagkas, A. Horvath, A. Altermatt, S. Pezold, M. Weigel, T. Haas, M. Amann, L. Kappos, T. Sprenger, O. Bieri, P. Cattin, K. Parmar. Automatic Spinal Cord Gray Matter Quantification: A Novel Approach. American Journal of Neuroradiology (AJNR). 2019 (in press).
How to use
- Install MATLAB (at least 2017a),
- required MATLAB toolboxes are Image Processing Toolbox, Parallel Computing Toolbox, and Curve Fitting Toolbox,
- download the content, and
- execute test.m .