(lif-sorn_py390_nest32) zbarni@zajzi-T460p:~/software/packages/nest/nest-simulator-3.2/build_lifsorn_py390$ cmake -Dwith-mpi=ON -Dwith-openmp=ON -Dwith-python=ON .. -- The CXX compiler identification is GNU 7.5.0 -- The C compiler identification is GNU 7.5.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Looking for include file inttypes.h -- Looking for include file inttypes.h - found -- Looking for include file mach-o/dyld.h -- Looking for include file mach-o/dyld.h - not found -- Looking for include file mach/mach.h -- Looking for include file mach/mach.h - not found -- Looking for include file memory.h -- Looking for include file memory.h - found -- Looking for include file stdint.h -- Looking for include file stdint.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for C++ include istream -- Looking for C++ include istream - found -- Looking for C++ include ostream -- Looking for C++ include ostream - found -- Looking for C++ include sstream -- Looking for C++ include sstream - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of long long -- Check size of long long - done -- Check size of u_int16_t -- Check size of u_int16_t - done -- Check size of uint16_t -- Check size of uint16_t - done -- Check size of u_int64_t -- Check size of u_int64_t - done -- Check size of uint64_t -- Check size of uint64_t - done -- Looking for NAN -- Looking for NAN - found -- Looking for isnan -- Looking for isnan - found -- Looking for M_E -- Looking for M_E - found -- Looking for M_PI -- Looking for M_PI - found -- Looking for expm1 -- Looking for expm1 - not found -- Host triple: x86_64-pc-linux -- Target triple: x86_64-pc-linux -- Found Python: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/bin/python3.9 (found suitable version "3.9.0", minimum required is "3.8") found components: Interpreter Development.Module -- Found Cython: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/bin/cython (found suitable version "0.29.25", minimum required is "0.28.3") -- Found LTDL: /usr/lib/x86_64-linux-gnu/libltdl.so -- Could NOT find Readline (missing: READLINE_LIBRARY READLINE_INCLUDE_DIR) -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Found GSL: /usr/include (found version "2.4") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found PY_mpi4py: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/lib/python3.9/site-packages/mpi4py -- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.69.0") -- Check the abort exitcode. -- Check the abort exitcode. 134 -- Check the segmentation fault exitcode. -- Check the segmentation fault exitcode. 139 -- Check whether the compiler ignores cmath makros. -- Check whether the compiler ignores cmath makros. OFF -- Check whether the compiler does NOT include <*.h> headers ISO conformant. -- Check whether the compiler does NOT include <*.h> headers ISO conformant. OFF -- Check whether the compiler respects symbolic signal names in signal.h. -- Check whether the compiler respects symbolic signal names in signal.h. OFF -- Check static template member declaration. -- Check static template member declaration. OFF -- Check for STL vector capacity base unity. -- Check for STL vector capacity base unity. ON -- Check for STL vector capacity doubling strategy. -- Check for STL vector capacity doubling strategy. ON -- Check whether the compiler fails with ICE. -- Check whether the compiler fails with ICE. OFF -- Check if ::nan is available from cmath. -- Check if ::nan is available from cmath. ON -- Check if ::isnan is available from cmath. -- Check if ::isnan is available from cmath. ON -- Check if Random123 generators work. -- Check if Random123 generators work. ON -- NEST version: UNKNOWN -- Found PythonInterp: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/bin/python (found version "3.9") -------------------------------------------------------------------------------- NEST Configuration Summary -------------------------------------------------------------------------------- Build type : Target System : Linux Cross Compiling : FALSE C compiler : GNU 7.5.0 (/usr/bin/cc) C compiler flags : -O2 -Wall -fopenmp -pthread -fdiagnostics-color=auto C++ compiler : GNU 7.5.0 (/usr/bin/c++) C++ compiler flags : -std=c++11 -O2 -Wall -fopenmp -pthread -fdiagnostics-color=auto Build dynamic : ON Built-in modules : models User modules : None Python bindings : Yes (Python 3.9.0: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/bin/python3.9) Includes : /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/include/python3.9 Libraries : Cython bindings : Yes (Cython 0.29.25: /home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/bin/cython) MPI4PY header : Yes (/home/zbarni/software/installed/miniconda3/envs/lif-sorn_py390_nest32/lib/python3.9/site-packages/mpi4py/include) Use threading : Yes (OpenMP: -fopenmp) Use GSL : Yes (GSL 2.4) Includes : /usr/include Libraries : /usr/lib/x86_64-linux-gnu/libgsl.so;/usr/lib/x86_64-linux-gnu/libgslcblas.so Use Readline : No Use libltdl : Yes (LTDL ) Includes : /usr/include Libraries : /usr/lib/x86_64-linux-gnu/libltdl.so Use doxygen : No Use MPI : Yes (MPI: /usr/bin/mpicxx) FLAGS : -pthread Includes : /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent;/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include;/usr/lib/x86_64-linux-gnu/openmpi/include Link Flags : -L/usr/lib -pthread Libraries : /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so;/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so Detailed timers : No Use MUSIC : No Use libneurosim : No Use Boost : No Use SIONlib : No