From e36310c078adb3814bada47ff7aa39f670a12553 Mon Sep 17 00:00:00 2001 From: Marouen Date: Fri, 22 Jul 2022 09:23:48 -0400 Subject: [PATCH] Update coverage report on Ubuntu (#256) * add bioc information * update website * add crane and docs * update crane * update worflow * update crane * update workflows * update workflows * update workfolw * update workfolw * update workfolw * update workfolw * Update main.yml * Update main.yml * Update main.yml * fix lioness py * udpate lioness in R * include calculations python * update panda rm missing * update panda * update lioness joblib * revert commits * ALPACA fix to NAs in community assignement * version bump * revert lioness * update crane with alpaca changes * update lioness * update lioness python * fix test * update workflows * put back github actions * Fixed typo * Added LIONESS-pearson option + unit test * changed param labels in LIONESS example * updated docs for lioness() function * Update main.yml * Update main.yml * Update DESCRIPTION * fix crane issue #240 * expanded PANDA and LIONESS description * update crane fix * added ALPACA, EGRET, and OTTER descriptions * Update README.md * typo in na.rm * update workflow * update workflow2 * fix-actions-3 * add r lib v2 * add r lib v2 * update condor test * update condor test * update condor test * update condor test * show testthat output * add pandoc and use cache * use built in check * use built in check * update actions with built in check * bump version * use built in coverage * use built in coverage * remove sudo * update actions * update actions * removed sudo from actions * ugrade to R42 * remove virtualenv * remove virtualenv * remove virtualenv * modify condor test * update condor test * update condor test * adding retiucualte to covr * adding retiucualte to covr * add panda test to coverignore * update actions * remove lioness tests from coverage * remove lioness tests from coverage * added MONSTER and SAMBAR * remove lionessR test * Added CONDOR and YARN * Update README.md * put back otter in rbuild * remove condor test * remove condor test * remove lioness docs * add lioness to buildingore * donttest lionesss * remove coverage from ubuntu test * remove rbuilignore * update rbuildignore * update rbuildignore * update rbuildignore * update rbuildignore * update rbuildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * add back buildignore * put back tests * add padanedge diff test * add back egeret test * add monster test * fix monster test * tolerance in expect equal * tolerance in expect equal * tolerance in expect equal * tolerance in expect equal * add sourceppi * fixed PANDA tests * modify panda test * update lioness test * fix expect message * update tests * update tests * update tests * update tests * update tests * update tests * reduced lioness test data * reduced lioness test data * reduced lioness test data * reduced lioness test data * reduce test size * updating bioc (#250) * updating bioc * remove empty lines * remove empty lines * update citation * update citation * Update README.md * Update README.md * Update main.yml * Update main.yml * Update .Rbuildignore * Update .Rbuildignore * update lioness test * removed two last lioness tests * removed two last lioness tests * removed two last lioness tests * no saving of lioness networks * no saving of lioness networks * no saving of lioness networks * no saving of lioness networks * update lioness test * lower sizeof test * update test data * update test data * update test data * reduce panda tests * remove old test data * remove old test data * Update main.yml Co-authored-by: Kate Hoff Shutta Co-authored-by: katehoffshutta <43797774+katehoffshutta@users.noreply.github.com> --- .github/workflows/main.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index eba5a55b..b37128fc 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -81,7 +81,6 @@ jobs: error-on: '"error"' - name: Report coverage - if: matrix.os == 'macos-latest' run: | covr::codecov() shell: Rscript {0}