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mesh geometry tools
A tool for reorienting and cropping MRI data
BrainBox is a web application that lets you annotate and segment 3D brain imaging data in real time, collaboratively.
Collaborative vectorial annotation tool for ultra high resolution data
A tool to apply a smoothly varying threshold to a nifti image
An MRI reader and writer that works on the browser
A marching cubes implementation, using libigl
Interactive multimodal atlas of the development of the ferret brain.
Aims at making beautiful graphs from folds
A collection of scripts and best-practices for sharing neuroimaging data.
Python tools to access MicroDraw annotations
Cerebellum meta-analysis and analysis
Hacky polarized light imaging device
Genomic architecture of neuroanatomical diversity
Code and data for the article “Evolution of neocortical folding: A phylogenetic comparative analysis of MRI from 34 primate species”
Grey-to-White matter Percent Contrast in Autism Spectrum Disorders
Scripts to flatten a directory structure, and to unflatten it.
Medical image format converter: from raw Bruker ParaVision to nifti.
A comparison between diffusion tractography and tract tracing in ferrets
Data Challenge on Autism Spectrum Disorder detection
A client-side wrapper for the npm struct package
Brain surface data visualiser. Works well with CollectionRAMON
Multi-platform visual quality control of Freesurfer cerebellum segmentations
Fast visual quality control tool for subcortical structures volumetry, coded in Java
SnipPeep is a fast, user friendly CNV viewer
Interactive viewer for the Brain Coactivation Map data