Releases: neurobagel/bagel-cli
Releases · neurobagel/bagel-cli
Release list
v0.11.5
🏠 Internal
- [ENH] Support catalog-mode data dictionaries #694 (@surchs @alyssadai)
- [MNT] Implement uv for dependency management #669 (@surchs)
Authors: 2
- Alyssa Dai (@alyssadai)
- Sebastian Urchs (@surchs)
v0.11.4
🚀 Enhancements
- [ENH] Relax sub prefix requirement #651 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.11.3
🚀 Enhancements
- [ENH] Warn instead of error when email and URL fields have empty strings #646 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.11.2
🚀 Enhancements
- [ENH] More informative warnings for invalid vs unsupported BIDS suffixes in
bids2tsvcommand #628 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.11.1
🐛 Bug Fixes
- [FIX] Support string references under
ReferencesAndLinksin dataset description file #631 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.11.0
💥 Breaking Changes
- [ENH] Replace
--nameand--portalwith required arg for data description file #623 (@alyssadai @surchs)
🏠 Internal
- [MODEL] Add schema for dataset description file #622 (@alyssadai)
Authors: 2
- Alyssa Dai (@alyssadai)
- Sebastian Urchs (@surchs)
v0.10.2
🚀 Enhancements
- [REF] Fetch supported BIDS terms from
neurobagel/communitiesinstead of hardcoding #611 (@alyssadai) - [MNT] Update default JSONLD output filenames #604 (@alyssadai)
🏠 Internal
- [REF] Rename references to Neurobagel "category" to "standardized variable" #595 (@alyssadai)
🔩 Dependency Updates
- [ENH] Support Python 3.14 #608 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.10.1
🧪 Tests
- [TST] Run tests on Python 3.12 and 3.13 #597 (@alyssadai)
🔩 Dependency Updates
- [FIX] Require Python <3.14 to avoid Pandera compatibility issues #601 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.10.0
🚀 Enhancements
- [ENH] Add
harmonize-phenocommand to create a harmonized TSV from a raw TSV & data dictionary #591 (@alyssadai)
🐛 Bug Fixes
- [FIX] Ensure git is installed in
nightlyDockerfile for dynamic versioning #584 (@alyssadai) - [FIX] Include
.gitfornightlyDocker build to enable version detection #583 (@alyssadai) - [FIX] Build
nightlyDocker image from source rather than PyPI #580 (@alyssadai)
🏠 Internal
- [REF] Use generic fixture for output JSONLD path in integration tests #581 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)
v0.9.2
🐛 Bug Fixes
- [FIX] Ensure
bagel bidsexits gracefully for BIDS table missing required column #579 (@alyssadai)
Authors: 1
- Alyssa Dai (@alyssadai)