diff --git a/.circleci/config.yml b/.circleci/config.yml
index 0246a08de..c65397687 100644
--- a/.circleci/config.yml
+++ b/.circleci/config.yml
@@ -60,7 +60,7 @@ jobs:
           name: run tests and coverage
           command: |
             . venv/bin/activate
-            pytest --junitxml=test-reports/junit.xml --cov-report=html:htmlcov hyppo/<< parameters.module >>
+            pytest --junitxml=test-reports/junit.xml --cov-report=html:htmlcov --cov=hyppo/<< parameters.module >> hyppo/<< parameters.module >>
       - store_test_results:
           path: test-reports
       - store_artifacts:
@@ -68,7 +68,7 @@ jobs:
       - store_artifacts:
           path: htmlcov
       - codecov/upload:
-          file: "./htmlcov/"
+          file: "./htmlcov/index.html"
   deploy:
     docker:
       - image: cimg/python:3.8
diff --git a/pytest.ini b/pytest.ini
index acb8f8d5d..b99f2661b 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -1,5 +1,5 @@
 [pytest]
-addopts = --cov=hyppo --doctest-modules
+addopts = --doctest-modules
 deselect = "hyppo/independence/kmerf.py"