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Neuroparc

This repository contains a number of useful parcellations, templates, masks, and transforms to (and from) MNI152NLin6 space. The files are named according to the BIDs specification.

Atlas Info Summary

Atlas Name # Regions Symmetrical? Hierarchical? Labelled? Generation Method Average Vol/Region Native coordinate space Description Sources Year of Origin
Tissue 3 No No 609031.667 (Tissue-based segmentation: WM, GM, CSF) 2018
Yeo 7 7 Yes No Yes Clustered to identify networks of functionally coupled regions 75383.571 FreeSurfer surface space Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ 2011
Yeo 7 Liberal 7 Yes No Yes Clustered to identify networks of functionally coupled regions 150676.143 FreeSurfer surface space Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ 2011
Yeo 17 17 Yes No Yes Clustered to identify networks of functionally coupled regions 31040.294 FreeSurfer surface space Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ 2011
Yeo 17 Liberal 17 Yes No Yes Clustered to identify networks of functionally coupled regions 62043.118 FreeSurfer surface space Local networks confined to sensory and motor cortices, functional connectivity followed topographic representations across adjacent areas https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/ 2011
Brodmann 40 Yes Yes No Brodman areas separated by gyri 32978.512 Corticall parcellation separating regions based on cellular morphology and organization http://digital.zbmed.de/zbmed/id/554966 1909
HarvardOxford 48 No Yes Yes 21966.104 http://neuro.imm.dtu.dk/wiki/Harvard-Oxford_Atlas
JHU 48 Yes No Yes One subject manually labelled and warped to 29 other adult atlases (Large Deformation Diffeomorphic Metric Mapping) 3541.792 A small version of a larger (289 ROI) atlas composed based on parcellation of deep white matter. Split into 4 groups: Tracts in the brainstem, projection fibers, association fibers, and commisural fibers https://www.ncbi.nlm.nih.gov/pubmed/14645885 2004
Princeton 49 Yes Yes Yes 1217.388 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4585523/ 2015
pp264 58 No No 470.966 https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3222858/
Desikan 70 Yes No No Anatomical Landmarks based on gyri. Averaged based on majority voting 24786.857 Surface parcellation https://www.sciencedirect.com/science/article/pii/S1053811906000437?via%3Dihub 2006
AAL 116 No No Yes Delineated with respect to anatomical landmarks (following sulci course in brain) 12758.353 MNI Automated Anatomical Labelling https://www.ncbi.nlm.nih.gov/pubmed/11771995 2002
CPAC200 200 No No 5860.755 https://github.com/FCP-INDI/C-PAC 2018
Schaefer2018 - 200 200 No No No Automatic using gwMRF 5278.425 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Schaefer2018 - 300 300 No No No Automatic using gwMRF 3518.95 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Glasser 360 Yes Yes Yes Semi-automated. Separated based on function, connectivity, cortical architecture, topography, and expert analysis 521.994 MNI Cortical parcellation from multi-modal images of 210 adults in HCP https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4990127/ 2016
Schaefer2018 - 400 400 No No No Automatic using gwMRF 2639.213 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Schaefer2018 - 1000 (Yeo 17) 1000 No No No Automatic using gwMRF 1055.685 Yeo 17 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Schaefer2018 - 1000 (Yeo 7) 1000 No No No Automatic using gwMRF 1055.685 Yeo 7 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Schaefer2018 - 1000 1000 No No No Automatic using gwMRF 1055.685 Gradient-weighted Markov Random Fields (gwMRF) to group similar fMRI regions (dependent on # of regions specified) http://people.csail.mit.edu/ythomas/publications/2018LocalGlobal-CerebCor.pdf 2017
Slab 1068 No 493.719 https://www.nitrc.org/projects/kessler_jama16/
Talairach 1105 No Yes Yes Semi-automated? 1698.114 Talairach coordinates A hierarchical atlas split into 5 leves: Hemisphere, Lobe, Gyrus, Tissue Type, and Cell Type https://www.ncbi.nlm.nih.gov/pubmed/7008525 1980
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