A repository containing our SfN code.
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README.md

README.md

sfn17

A repository containing our SfN code.

Dependencies

Packages

To use the notebooks included here, please first install the following packages, from an R terminal:

install.packages(c('ggplot2','latex2exp','igraph','devtools'))
require('devtools')

and follow this tutorial for the fmriutils package.

Data

The data for the notebooks can be downloaded as follows:

sudo mkdir /data/
sudo chmod -R 777 /data

cd /data
wget http://openconnecto.me/mrdata/share/derivatives/dwi_edgelists.tar.gz
wget http://openconnecto.me/mrdata/share/derivatives/fmri_edgelists.tar.gz
wget http://openconnecto.me/mrdata/share/connectome_stats/connectome_stats.zip

mkdir -p /data/connectome_stats /data/dwi/edgelists /data/fmri/ranked/edgelists
mv dwi_edgelists.tar.gz /data/dwi/edgelists
cd /data/dwi/edgelists
tar -xvzf dwi_edgelists.tar.gz
mv /data/fmri_edgelists.tar.gz /data/fmri/ranked/edgelists
cd /data/fmri/ranked/edgelists
tar -xvzf fmri_edgelists.tar.gz
mv /data/connectome_stats.zip /data/connectome_stats.zip
cd /data/connectome_stats
unzip connectome_stats.zip

Notebooks

The notebooks can be visualized as below:

Within Modality Ipsilateral vs Contralateral
Between Modality Ipsilateral vs Contralateral
Within Modality Bilateral vs Nonbilateral
Between Modality Ipsilateral vs Contralateral