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cmake: export targets, allow to build models via CMake
This PR aims to allow dependent projects to build their models via CMake rather than a combination of shell scripts and Makefiles. In the long term, this may help facilitate building natively on Windows. To try: ``` git clone -b imported-main https://github.com/BlueBrain/neurodamus-models.git cd neurodamus-models ``` Create a `CMakeLists.txt` with contents like: ```cmake cmake_minimum_required(VERSION 3.28) project(newrodamus) find_package(neuron REQUIRED) create_libnrnmech(MOD_FILES neocortex/mod/v6/CaDynamics_DC0.mod neocortex/mod/v6/Ca_HVA2.mod neocortex/mod/v6/Ca_LVAst.mod neocortex/mod/v6/DetAMPANMDA.mod neocortex/mod/v6/DetGABAAB.mod neocortex/mod/v6/GluSynapse.mod neocortex/mod/v6/Ih.mod neocortex/mod/v6/K_Pst.mod neocortex/mod/v6/K_Tst.mod neocortex/mod/v6/KdShu2007.mod neocortex/mod/v6/NaTg.mod neocortex/mod/v6/Nap_Et2.mod neocortex/mod/v6/ProbAMPANMDA_EMS.mod neocortex/mod/v6/ProbGABAAB_EMS.mod neocortex/mod/v6/SK_E2.mod neocortex/mod/v6/SKv3_1.mod neocortex/mod/v6/StochKv3.mod neocortex/mod/v6/TTXDynamicsSwitch.mod neocortex/mod/v6/VecStim.mod neocortex/mod/v6/gap.mod neocortex/mod/v6/netstim_inhpoisson.mod ) ``` Then build and install: ``` cmake -B build -S . -GNinja -DCMAKE_INSTALL_PREFIX=x86_64 cmake --build build cmake --install build ``` To be continued‥
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| #include <cstdio> | ||
| namespace coreneuron { | ||
| extern int nrnmpi_myid; | ||
| extern int nrn_nobanner_; | ||
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| @MECH_DECLARE@ | ||
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| void modl_reg() { | ||
| if (!nrn_nobanner_) if (nrnmpi_myid < 1) { | ||
| fprintf(stderr, " Additional mechanisms from files\n"); | ||
| @MECH_PRINT@ | ||
| fprintf(stderr, "\n\n"); | ||
| } | ||
| @MECH_REGISTRE@ | ||
| } | ||
| } //namespace coreneuron |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,16 @@ | ||
| #include <stdio.h> | ||
| #include "hocdec.h" | ||
| extern int nrnmpi_myid; | ||
| extern int nrn_nobanner_; | ||
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| @MECH_DECLARE@ | ||
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| extern "C" void modl_reg() { | ||
| if (!nrn_nobanner_) if (nrnmpi_myid < 1) { | ||
| fprintf(stderr, "Additional mechanisms from files\n"); | ||
| @MECH_PRINT@ | ||
| fprintf(stderr, "\n"); | ||
| } | ||
| @MECH_REGISTRE@ | ||
| } | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,128 @@ | ||
| include(CMakeFindDependencyMacro) | ||
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| find_dependency(Threads) | ||
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| include("${CMAKE_CURRENT_LIST_DIR}/neuronTargets.cmake") | ||
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| get_filename_component(_dir "${CMAKE_CURRENT_LIST_FILE}" PATH) | ||
| get_filename_component(_prefix "${_dir}/../../.." ABSOLUTE) | ||
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| set(NRN_ENABLE_CORENEURON @NRN_ENABLE_CORENEURON@) | ||
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| set(_NEURON_MAIN "${_prefix}/share/nrn/nrnmain.cpp") | ||
| set(_NEURON_MAIN_INCLUDE_DIR "${_prefix}/include/nrncvode") | ||
| set(_NEURON_MECH_REG "${_prefix}/share/nrn/mod_reg_nrn.cpp.in") | ||
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| set(_CORENEURON_BASE_MOD "${_prefix}/share/modfile") | ||
| set(_CORENEURON_MAIN "${_prefix}/share/coreneuron/coreneuron.cpp") | ||
| set(_CORENEURON_MECH_REG "${_prefix}/share/nrn/mod_reg_corenrn.cpp.in") | ||
| set(_CORENEURON_MECH_ENG "${_prefix}/share/coreneuron/enginemech.cpp") | ||
| set(_CORENEURON_RANDOM_INCLUDE "${_prefix}/include/coreneuron/utils/randoms") | ||
| set(_CORENEURON_FLAGS "@CORENRN_CXX_FLAGS@") | ||
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| find_program(NOCMODL nocmodl REQUIRED) | ||
| find_program(NMODL nmodl REQUIRED) | ||
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| function(merge_modfile_lists) | ||
| cmake_parse_arguments(MERGE_MODS "" "" "MOD_FILES" ${ARGN}) | ||
| endfunction() | ||
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| function(create_nrnmech) | ||
| set(options CORENEURON INSTALL_CPP INSTALL_MOD SPECIAL) | ||
| set(oneValueArgs MECHANISM_NAME) | ||
| cmake_parse_arguments(NRN_MECH "${options}" "${oneValueArgs}" "MOD_FILES" ${ARGN}) | ||
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| set(CORE "") | ||
| set(INPUT_MAIN ${_NEURON_MAIN}) | ||
| set(INPUT_MECH_REG ${_NEURON_MECH_REG}) | ||
| set(RETURN_TYPE "\"C\" void") | ||
| set(TRANSPILER "${NOCMODL}") | ||
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| if(NRN_MECH_CORENEURON) | ||
| if(NOT NRN_ENABLE_CORENEURON) | ||
| message(FATAL_ERROR "CoreNEURON support not enabled") | ||
| endif() | ||
| set(CORE "core") | ||
| set(INPUT_MAIN ${_CORENEURON_MAIN}) | ||
| set(INPUT_MECH_REG ${_CORENEURON_MECH_REG}) | ||
| set(RETURN_TYPE "int") | ||
| set(TRANSPILER "${NMODL}") | ||
| endif() | ||
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| set(OUTDIR "${CORE}neuron") | ||
| set(LIBNAME "${CORE}nrnmech") | ||
| set(EXENAME "${CORE}special") | ||
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| foreach(MOD_FILE IN LISTS NRN_MECH_MOD_FILES) | ||
| get_filename_component(MOD_STUB "${MOD_FILE}" NAME_WLE) | ||
| list(APPEND INPUT_STUBS "${MOD_STUB}") | ||
| list(APPEND MOD_FILES "${MOD_FILE}") | ||
| endforeach() | ||
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| if(NRN_MECH_CORENEURON) | ||
| # CoreNEURON requires additional mod files. Only append them to the input list if similar named | ||
| # mods are _not yet present_ | ||
| file(GLOB BASE_MOD_FILES "${_CORENEURON_BASE_MOD}/*.mod") | ||
| foreach(MOD_FILE IN LISTS BASE_MOD_FILES) | ||
| get_filename_component(MOD_STUB "${MOD_FILE}" NAME_WLE) | ||
| if("${MOD_STUB}" IN_LIST INPUT_STUBS) | ||
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| else() | ||
| list(APPEND MOD_FILES "${MOD_FILE}") | ||
| endif() | ||
| endforeach() | ||
| endif() | ||
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| foreach(MOD_FILE IN LISTS MOD_FILES) | ||
| # set(MOD_FILE common/mod/DetAMPANMDA.mod) | ||
| get_filename_component(MOD_STUB "${MOD_FILE}" NAME_WLE) | ||
| set(CPP_FILE "cpp/${OUTDIR}/${MOD_STUB}.cpp") | ||
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| list(APPEND L_MECH_DECLARE "extern ${RETURN_TYPE} _${MOD_STUB}_reg(void)\;") | ||
| list(APPEND L_MECH_PRINT "fprintf(stderr, \" \\\"${MOD_FILE}\\\"\")\;") | ||
| list(APPEND L_MECH_REGISTRE "_${MOD_STUB}_reg()\;") | ||
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| add_custom_command(COMMAND "${TRANSPILER}" -o "${CMAKE_CURRENT_BINARY_DIR}/cpp/${OUTDIR}" | ||
| "${MOD_FILE}" OUTPUT "${CMAKE_CURRENT_BINARY_DIR}/${CPP_FILE}") | ||
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| list(APPEND L_SOURCES "${CMAKE_CURRENT_BINARY_DIR}/${CPP_FILE}") | ||
| endforeach() | ||
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| list(JOIN L_MECH_DECLARE "\n" MECH_DECLARE) | ||
| list(JOIN L_MECH_PRINT " \n" MECH_PRINT) | ||
| list(JOIN L_MECH_REGISTRE " \n" MECH_REGISTRE) | ||
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| get_filename_component(MECH_REG "${INPUT_MECH_REG}" NAME_WLE) | ||
| configure_file(${INPUT_MECH_REG} ${MECH_REG} @ONLY) | ||
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| if(NRN_MECH_CORENEURON) | ||
| add_library(${LIBNAME} SHARED ${_CORENEURON_MECH_ENG} ${L_SOURCES}) | ||
| target_include_directories(${LIBNAME} PRIVATE ${_CORENEURON_RANDOM_INCLUDE}) | ||
| target_compile_definitions(${LIBNAME} PRIVATE ADDITIONAL_MECHS NRN_PRCELLSTATE=0 | ||
| CORENEURON_BUILD) | ||
| target_compile_definitions(${LIBNAME} PRIVATE "${_CORENEURON_FLAGS}") | ||
| target_link_libraries(${LIBNAME} PUBLIC neuron::corenrn) | ||
| else() | ||
| add_library(${LIBNAME} SHARED ${L_SOURCES}) | ||
| target_link_libraries(${LIBNAME} PUBLIC neuron::nrniv) | ||
| endif() | ||
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| if(NRN_MECH_INSTALL_CPP) | ||
| install(FILES ${L_SOURCES} DESTINATION "share/${LIBNAME}$<$<BOOL:${NRN_MECH_MECHANISM_NAME}>:_${NRN_MECH_MECHANISM_NAME}>/cpp") | ||
| endif() | ||
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| if(NRN_MECH_INSTALL_MOD) | ||
| install(FILES ${MOD_FILES} DESTINATION "share/${LIBNAME}$<$<BOOL:${NRN_MECH_MECHANISM_NAME}>:_${NRN_MECH_MECHANISM_NAME}>/mod") | ||
| endif() | ||
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| install(TARGETS ${LIBNAME} DESTINATION lib) | ||
| set_target_properties(${LIBNAME} PROPERTIES OUTPUT_NAME "${LIBNAME}$<$<BOOL:${NRN_MECH_MECHANISM_NAME}>:_${NRN_MECH_MECHANISM_NAME}>") | ||
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| if(NRN_MECH_SPECIAL) | ||
| add_executable(${EXENAME} ${INPUT_MAIN} ${MECH_REG}) | ||
| target_include_directories(${EXENAME} PUBLIC ${_NEURON_MAIN_INCLUDE_DIR}) | ||
| target_link_libraries(${EXENAME} ${LIBNAME}) | ||
| set_target_properties(${EXENAME} PROPERTIES OUTPUT_NAME "special$<$<BOOL:${NRN_MECH_CORENEURON}>:-core>") | ||
| install(TARGETS ${EXENAME} DESTINATION bin) | ||
| endif() | ||
| endfunction() |
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