From 6d83e26ab35fffffc6f35180f8dc8c35ba217b05 Mon Sep 17 00:00:00 2001
From: Alexandru Fikl <alexfikl@gmail.com>
Date: Mon, 2 Dec 2024 15:39:37 +0100
Subject: [PATCH 1/2] switch from setup.py to pyproject.toml

---
 .gitignore     |  1 +
 pyproject.toml | 56 ++++++++++++++++++++++++++++++++++++++++++++++++++
 setup.py       | 35 -------------------------------
 3 files changed, 57 insertions(+), 35 deletions(-)
 create mode 100644 pyproject.toml
 delete mode 100644 setup.py

diff --git a/.gitignore b/.gitignore
index a4d3737..205aa1f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -5,3 +5,4 @@ docs/_build/
 **/*.so
 **/__pycache__
 jitcode/version.py
+*.egg-info/
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 0000000..2b9a3d4
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,56 @@
+[build-system]
+build-backend = "setuptools.build_meta"
+requires = [
+    "setuptools>=64",
+    "setuptools-scm>=7",
+]
+
+[project]
+name = "jitcode"
+dynamic = ["version"]
+description = "Just-in-Time Compilation for Ordinary Differential Equations"
+readme = "README.rst"
+license = { text = "BSD-3-Clause" }
+authors = [
+    { name = "Gerrit Ansmann", email = "gansmann@uni-bonn.de" },
+]
+requires-python = ">=3.6"
+classifiers = [
+    "Development Status :: 4 - Beta",
+    "License :: OSI Approved :: BSD License",
+    "Operating System :: POSIX",
+    "Operating System :: MacOS :: MacOS X",
+    "Operating System :: Microsoft :: Windows",
+    "Programming Language :: Python",
+    "Topic :: Scientific/Engineering :: Mathematics",
+]
+dependencies = [
+	"jitcxde_common>=1.5.4",
+    "numpy",
+    "scipy",
+    "symengine>=0.3.1.dev0",
+]
+
+[project.optional-dependencies]
+test = [
+    # NOTE: required for expr.simplify (symengine calls sympy for that)
+    # https://github.com/symengine/symengine.py/issues/405
+    "sympy"
+]
+
+[project.urls]
+Documentation = "https://jitcode.readthedocs.io"
+Homepage = "http://github.com/neurophysik/jitcode"
+
+[tool.setuptools.packages.find]
+include = [
+    "jitcode*",
+]
+
+[tool.setuptools.package-data]
+jitcode = [
+    "jitced_template.c",
+]
+
+[tool.setuptools_scm]
+write_to = "jitcode/version.py"
diff --git a/setup.py b/setup.py
deleted file mode 100644
index 78684b0..0000000
--- a/setup.py
+++ /dev/null
@@ -1,35 +0,0 @@
-from setuptools import setup
-from io import open
-
-requirements = [
-	'jitcxde_common>=1.5.4',
-	'symengine>=0.3.1.dev0',
-	'scipy',
-	'numpy'
-]
-
-setup(
-	name = 'jitcode',
-	description = 'Just-in-Time Compilation for Ordinary Differential Equations',
-	long_description = open('README.rst', encoding='utf8').read(),
-	author = 'Gerrit Ansmann',
-	author_email = 'gansmann@uni-bonn.de',
-	url = 'http://github.com/neurophysik/jitcode',
-	python_requires=">=3.3",
-	packages = ['jitcode'],
-	package_data = {'jitcode': ['jitced_template.c']},
-	include_package_data = True,
-	install_requires = requirements,
-	setup_requires = ['setuptools_scm'],
-	use_scm_version = {'write_to': 'jitcode/version.py'},
-	classifiers = [
-		'Development Status :: 4 - Beta',
-		'License :: OSI Approved :: BSD License',
-		'Operating System :: POSIX',
-		'Operating System :: MacOS :: MacOS X',
-		'Operating System :: Microsoft :: Windows',
-		'Programming Language :: Python',
-		'Topic :: Scientific/Engineering :: Mathematics',
-		],
-)
-

From 75db6bb22cdcc18b5d60453639724b21bd390631 Mon Sep 17 00:00:00 2001
From: Alexandru Fikl <alexfikl@gmail.com>
Date: Mon, 2 Dec 2024 16:37:29 +0100
Subject: [PATCH 2/2] add unittesting on Github Actions

---
 .github/workflows/ci.yml | 55 ++++++++++++++++++++++++++++++++++++++++
 1 file changed, 55 insertions(+)
 create mode 100644 .github/workflows/ci.yml

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
new file mode 100644
index 0000000..1df0059
--- /dev/null
+++ b/.github/workflows/ci.yml
@@ -0,0 +1,55 @@
+name: CI
+
+on:
+  push:
+    branches: [ 'master' ]
+  pull_request:
+    branches: [ 'master' ]
+  schedule:
+    # at 12:00 (UTC) on the first day of the month
+    - cron: '0 12 1 * *'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: Unittest (${{ matrix.os }}-${{ matrix.compiler }}-py${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest]
+        compiler: [gcc, clang]
+        python-version: ['3.10', '3.x']
+        include:
+          - os: ubuntu-20.04
+            python-version: '3.6'
+            compiler: gcc
+          - os: ubuntu-20.04
+            python-version: '3.6'
+            compiler: clang
+      fail-fast: false
+
+    steps:
+    - uses: actions/checkout@v4
+    - uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Install System Dependencies
+      if: matrix.os == 'ubuntu-latest' && matrix.compiler == 'clang'
+      run: |
+        sudo apt-get install libomp5 libomp-dev
+
+    - name: Install Python Dependencies
+      run: |
+        python -m pip install --upgrade pip setuptools setuptools-scm wheel
+        python -m pip install --upgrade numpy scipy jitcxde_common sympy
+
+    - name: Run Tests
+      env:
+        CC: ${{ matrix.compiler }}
+      run: |
+        python -m pip install --verbose --no-build-isolation --editable .
+        python -m unittest discover -b -f -v tests