Browse files

updated readme

  • Loading branch information...
1 parent e8ca06f commit 5d0b2d5b0ed2c7bca4907db28d2a571098b7a6a5 @neurosnap committed Feb 28, 2014
Showing with 165 additions and 74 deletions.
  1. +165 −74 README.md
View
239 README.md
@@ -33,74 +33,125 @@ It uses gunicorn as the WSGI HTTP Server and nginx as the Proxy HTTP Server.
INSTALL
=========
-Windows
----------
+#### HOW TO DEVELOP ON DEBIAN-DIST (UBUNTU)
-##### Prereqs
-
- * Python 2.7 (determine whether 32 or 64 bit)
- * Microsoft Visual C++ 2008 Redistributable Package
- (identical 32 or 64 bit as python)
- [32 bit](http://www.microsoft.com/en-us/download/details.aspx?displaylang=en&id=29)
- [64 bit](http://www.microsoft.com/en-us/download/details.aspx?id=15336)
- * Git
-
-##### Download DCMDB
-
-SSH - git@github.com:neurosnap/dcmdb.git
-
-[HTTPS](https://github.com/neurosnap/dcmdb.git)
+```
+$ apt-get update
+$ apt-get upgrade
+$ apt-get install python-pip
+$ pip install virtualenv
+$ mkdir ~/.virtualenvs
+$ pip install virtualenvwrapper
+$ vim ~/.bash_profile
+```
+in .bash_profile
```
-$ git clone git@github.com:neurosnap/dcmdb.git
-$ cd dcmdb
+export WORKON_HOME=~/.virtualenvs
+/usr/local/bin/virtualenvwrapper.sh
```
-Download: https://bitbucket.org/pypa/setuptools/raw/bootstrap/ez_setup.py
-Install setuptools
+Make a virtualenv
+```
+$ mkvirtualenv dcmdb
+```
-##### setuptools
+Start working on a virtualenv (after mkvirtualenv it usually loads right into the virt)
```
-$ cd /path/to/ez_setup.py
-$ python ez_setup.py install
+$ workon dcmdb
```
-##### Install PIP
+deactivate virtualenv (just an example, dont do this now)
```
-$ easy_install pip
+$ deactivate
```
-##### Install the rest of the dependencies that actually work through PIP
+Now install python dependencies
```
-$ pip install -r dependencies.txt
+$ pip install -r ./conf/dependencies.txt
```
dependencies.txt
```
Django==1.5.4
+Pillow==2.2.1
South==0.8.2
-psycopg2==2.5.1
-argparse==1.2.1
+gunicorn==18.0
+matplotlib==1.3.0
nose==1.3.0
+numpy==1.7.1
+psycopg2==2.5.1
pydicom==0.9.8
pyparsing==2.0.1
python-dateutil==2.1
+setproctitle==1.1.8
six==1.4.1
-bleach==1.2.2
-html5lib==0.95
+tornado==3.1.1
yolk==0.4.3
```
-##### Install Postgresql
+##### HOW TO INSTALL GDCM
-http://www.postgresql.org/download/windows/
+###### PRE-REQS
-Set password for "postgres" user
-Open pgAdmin III
-Connect to PostgreSQL
-Create database "dcmdb" set owner to "postgres"
+```
+apt-get install cmake-curses-gui
+apt-get install libpcre3 libpcre3-dev
+```
+
+###### SWIG
+
+ * Download the latest version of SWIG
+ * Extract compressed file e.g. swig-2.0.11
+
+```
+$ cd swig-2.0.11
+$ ./configure
+$ make
+$ make install
+```
+
+###### GDCM
+
+ * Download the latest version of GDCM
+ * Extract compressed file e.g. gdcm.tar.bz2
+
+```
+$ mkdir gdcm-build
+$ cd gdcm
+$ rm CMakeCache.txt
+$ cd ../gdcm-build
+$ ccmake ../gdcm
+```
+
+ * Screen will come up,
+ * Press [T] to go to advanced mode
+ * SET CMAKE\_C\_FLAGS to -fPIC
+ * SET CMAKE\_CXX\_FLAGS to -fPIC [Could be optional]
+ * Press [C] to configure
+ * SET GDCM\_WRAP\_PYTHON to ON
+ * [G] to generate
+
+```
+$ make
+$ make install
+```
-##### Set up local django settings file
+###### Git
+
+```
+$ apt-get install git-core
+```
+
+##### Download DCMDB
+
+SSH: git@github.com:neurosnap/dcmdb.git
+HTTPS: https://github.com/neurosnap/dcmdb.git
+
+```
+$ git clone git@github.com:neurosnap/dcmdb.git
+$ cd dcmdb
+```
Create dicomdb/settings_dev.py file
```
@@ -117,8 +168,6 @@ EMAIL_HOST_USER = ''
EMAIL_PASS = ''
```
-##### Run
-
```
$ python manage.py syncdb
$ python manage.py migrate
@@ -138,67 +187,111 @@ If you get an error like "GROUP not found" when going to /users:
Done!
+#### HOW TO DEVELOP ON WINDOWS (Get ready for hell)
-HOW TO DEVELOP ON DEBIAN-DIST (UBUNTU)
----------
+##### Install msysgit 32bit (must be 32bit)
-```
-$ apt-get update
-$ apt-get upgrade
-$ apt-get install python-pip
-$ pip install virtualenv
-$ mkdir ~/.virtualenvs
-$ pip install virtualenvwrapper
-$ vim ~/.bash_profile
-```
+I chose msysgit because nothing that is preinstalled with cygwin worked
+for me very well. It was a living nightmare getting everything syncd using cygwin.
-in .bash_profile
-```
-export WORKON_HOME=~/.virtualenvs
-/usr/local/bin/virtualenvwrapper.sh
-```
+##### Install python 2.7
-Make a virtualenv
-```
-$ mkvirtualenv dcmdb
-```
+Add C:/Python27;C:/Python27/Scripts;C:/Python27/Lib;C:/Python27/DLLs; to environmental variables
-Start working on a virtualenv (after mkvirtualenv it usually loads right into the virt)
+Download: https://bitbucket.org/pypa/setuptools/raw/bootstrap/ez_setup.py
+Install setuptools
+
+##### setuptools
```
-$ workon dcmdb
+$ cd /path/to/ez_setup.py
+$ python ez_setup.py install
```
-deactivate virtualenv (just an example, dont do this now)
+##### Install PIP
```
-$ deactivate
+$ easy_install pip
```
-Now install python dependencies
+##### Install the rest of the dependencies that actually work through PIP
```
-$ pip install -r ./conf/dependencies.txt
+$ pip install -r dependencies.txt
```
dependencies.txt
```
Django==1.5.4
-Pillow==2.2.1
South==0.8.2
+argparse==1.2.1
nose==1.3.0
-psycopg2==2.5.1
pydicom==0.9.8
pyparsing==2.0.1
python-dateutil==2.1
-setproctitle==1.1.8
six==1.4.1
+tornado==3.1.1
+bleach==1.2.2
+html5lib==0.95
yolk==0.4.3
```
-##### Download DCMDB
+##### Install matplotlib 32 bit v1.3.1+ via installer
+
+ * http://matplotlib.org/downloads.html
+
+##### Install numpy via installer
+
+##### Install pillow via installer
+
+##### Install gdcm v2.4.0+ via installer
-SSH - git@github.com:neurosnap/dcmdb.git
+ * http://sourceforge.net/projects/gdcm/files/gdcm%202.x/GDCM%202.4.0/
-[HTTPS](https://github.com/neurosnap/dcmdb.git)
+Add C:/Program Files (x86)/GDCM 2.4.0/bin to envrionmental variables
+Move C:/Program Files (x86)/GDCM 2.4.0/ to C:/Python27/Lib/site-packages
+ * _gdcmswig.pyd
+ * gdcm.py
+ * gdcmswig.py
+
+##### Install Postgresql
+
+http://www.postgresql.org/download/windows/
+
+Set password for "postgres" user
+Open pgAdmin III
+Connect to PostgreSQL
+Create database "dcmdb" set owner to "postgres"
+
+###### Install psycopg2
+
+I had to download MINGW to install psycopg2.
+
+###### Install MINGW with gcc and g++
+
+ * http://sourceforge.net/projects/mingw/files/
+
+###### Configure MINGW
+
+ * Add C:\MinGW\bin to PATH environment variable
+ * Create distutils.cfg in C:\Python27\Lib\distutils
+
+distutils.cfg
+```
+[build]
+
+compiler=mingw32
+```
+
+ * Open cygwinccompiler.py in the same directory
+ * FIND/REPLACE all "-mno-cygwin" with blank ""
+ * SAVE
+
+Open msysgit
+
+```
+$ pip install psycopg2
+```
+
+##### Download DCMDB
```
$ git clone git@github.com:neurosnap/dcmdb.git
$ cd dcmdb
@@ -219,8 +312,6 @@ EMAIL_HOST_USER = ''
EMAIL_PASS = ''
```
-##### Run
-
```
$ python manage.py syncdb
$ python manage.py migrate

0 comments on commit 5d0b2d5

Please sign in to comment.