Checking overlaps for volume TP_SiPM_CASE:4417 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4418 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4419 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4420 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4421 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4422 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4423 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4424 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4425 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4426 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4427 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4428 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4429 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4430 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4431 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_CASE:4432 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WINDOW:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_SENSAREA:0 (G4Box) ... OK! Checking overlaps for volume TP_SiPM_WLS:0 (G4Box) ... OK! Checking overlaps for volume ICS:0 (G4Tubs) ... OK! Geometry overlaps check completed ! ====================================================================== ====== Radioactive Decay Physics Parameters ======= ====================================================================== min MeanLife (from G4NuclideTable) 1 ns Max life time (from G4DeexPrecoParameters) 1000 ps Internal e- conversion flag 1 Stored internal conversion coefficients 1 Enabled atomic relaxation mode 1 Enable correlated gamma emission 0 Max 2J for sampling of angular correlations 10 Atomic de-excitation enabled 1 Auger electron emission enabled 1 Check EM cuts disabled for atomic de-excitation 1 Use Bearden atomic level energies 0 Use ANSTO fluorescence model 0 Threshold for very long decay time at rest 3.171e+10 y ====================================================================== ====================================================================== ====== Radioactive Decay Physics Parameters ======= ====================================================================== min MeanLife (from G4NuclideTable) 1 ns Max life time (from G4DeexPrecoParameters) 1000 ps Internal e- conversion flag 1 Stored internal conversion coefficients 1 Enabled atomic relaxation mode 1 Enable correlated gamma emission 0 Max 2J for sampling of angular correlations 10 Atomic de-excitation enabled 1 Auger electron emission enabled 1 Check EM cuts disabled for atomic de-excitation 1 Use Bearden atomic level energies 0 Use ANSTO fluorescence model 0 Threshold for very long decay time at rest 3.171e+10 y ====================================================================== TOTAL COUNTS: 0 ************************************************************** Geant4 version Name: geant4-11-01-patch-02 [MT] (15-June-2023) Copyright : Geant4 Collaboration References : NIM A 506 (2003), 250-303 : IEEE-TNS 53 (2006), 270-278 : NIM A 835 (2016), 186-225 WWW : http://geant4.org/ ************************************************************** <<< Geant4 Physics List simulation engine: G4GenericPhysicsList Checking overlaps for volume TANK:0 (G4Tubs) ... OK! Checking overlaps for volume WATER:0 (G4Tubs) ... OK! Checking overlaps for volume VESSEL:0 (G4Tubs) ... OK! Checking overlaps for volume GAS:0 (G4Tubs) ... OK! Checking overlaps for volume ICS:0 (G4SubtractionSolid) ... OK! Checking overlaps for volume FIELD_CAGE:0 (G4Tubs) ... OK! Checking overlaps for volume ACTIVE:0 (G4Tubs) ... OK! Checking overlaps for volume CATHODE:0 (G4Tubs) ... OK! Checking overlaps for volume ANODE:0 (G4Tubs) ... OK! Checking overlaps for volume ANODE:1 (G4Tubs) ... OK! Checking overlaps for volume READOUT_PLANE:0 (G4Tubs) ... OK! Checking overlaps for volume READOUT_PLANE:1 (G4Tubs) ... OK! Running geometry overlaps check... Checking overlaps for volume LABORATORY:0 (G4Box) ... OK! Checking overlaps for volume TANK:0 (G4Tubs) ... OK! Checking overlaps for volume WATER:0 (G4Tubs) ... OK! Checking overlaps for volume VESSEL:0 (G4Tubs) ... OK! Checking overlaps for volume GAS:0 (G4Tubs) ... OK! Checking overlaps for volume ICS:0 (G4SubtractionSolid) ... OK! Checking overlaps for volume FIELD_CAGE:0 (G4Tubs) ... OK! Checking overlaps for volume ACTIVE:0 (G4Tubs) ... OK! Checking overlaps for volume CATHODE:0 (G4Tubs) ... OK! Checking overlaps for volume ANODE:0 (G4Tubs) ... OK! Checking overlaps for volume ANODE:1 (G4Tubs) ... OK! Checking overlaps for volume READOUT_PLANE:0 (G4Tubs) ... OK! Checking overlaps for volume READOUT_PLANE:1 (G4Tubs) ... OK! Geometry overlaps check completed ! ************************************************************** Geant4 version Name: geant4-11-01-patch-02 [MT] (15-June-2023) Copyright : Geant4 Collaboration References : NIM A 506 (2003), 250-303 : IEEE-TNS 53 (2006), 270-278 : NIM A 835 (2016), 186-225 WWW : http://geant4.org/ ************************************************************** <<< Geant4 Physics List simulation engine: G4GenericPhysicsList ### Birks coefficients used in run time Running geometry overlaps check... Checking overlaps for volume WORLD:0 (G4Box) ... OK! Checking overlaps for volume BLACK BOX:0 (G4Box) ... OK! Checking overlaps for volume SIPM_BOARD:1 (G4Box) ... OK! ----------------------------------------------- Captured stderr call ----------------------------------------------- Kr83Generator::Kr83Generator, probability to emit an X-ray 20.7411 percent Kr83Generator::Kr83Generator, probability to emit an X-ray 20.7411 percent -------- WWWW ------- G4Exception-START -------- WWWW ------- *** G4Exception : GeomVol1002 issued by : G4PVPlacement::CheckOverlaps() Overlap with volume already placed ! Overlap is detected for volume KAPTON_BOARD:0 (G4Box) with SIPMSensl:0 (G4Box) overlap at local point (-0.580144,0.392996,0.175) by 150 um (max of 203 cases) NOTE: Reached maximum fixed number -1- of overlaps reports for this volume ! *** Fatal Exception *** core dump *** *** This is a warning message that has been turned into exception. *** **** Track information is not available at this moment **** Step information is not available at this moment -------- WWWW -------- G4Exception-END --------- WWWW ------- *** G4Exception: Aborting execution *** ================================================= warnings summary ================================================= ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:10 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:10: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _nlv = LooseVersion(_np_version) ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:11 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:11: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_under1p16 = _nlv < LooseVersion("1.16") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:12 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:12: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_under1p17 = _nlv < LooseVersion("1.17") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:13 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:13: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_under1p18 = _nlv < LooseVersion("1.18") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:14 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:14: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_under1p19 = _nlv < LooseVersion("1.19") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:15 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/__init__.py:15: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_under1p20 = _nlv < LooseVersion("1.20") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/setuptools/_distutils/version.py:345: 1 warning tests/pytest/persistency_test.py: 60 warnings tests/pytest/sensitive_detectors_test.py: 9 warnings /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/setuptools/_distutils/version.py:345: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. other = LooseVersion(other) ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/function.py:125 ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/function.py:125 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/numpy/function.py:125: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(_np_version) >= LooseVersion("1.17.0"): ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:20 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:20: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. min_numpy_version = LooseVersion('1.9.3') ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:21 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:21: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. min_numexpr_version = LooseVersion('2.6.2') ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:22 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:22: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. min_hdf5_version = LooseVersion('1.8.4') ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:23 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:23: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. min_blosc_version = LooseVersion("1.4.1") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:24 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/req_versions.py:24: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. min_blosc_bitshuffle_version = LooseVersion("1.8.0") ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/filters.py:27 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/filters.py:27: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. blosc_version = LooseVersion(tables.which_lib_version("blosc")[1]) ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/numexpr/expressions.py:21 ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/numexpr/expressions.py:21 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/numexpr/expressions.py:21: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. _np_version_forbids_neg_powint = LooseVersion(numpy.__version__) >= LooseVersion('1.12.0b1') ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:25 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:25: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import resource_filename ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:36 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:36: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. hdf5_version = LooseVersion(tables.hdf5_version) ../../../../anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:37 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/tables/tests/common.py:37: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. blosc_version = LooseVersion(tables.which_lib_version("blosc")[1]) tests/pytest/produce_output_test.py::test_create_nexus_output_file_next100 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/pytest/produce_output_test.py::test_create_nexus_output_file_next100 returned '/tmp/pytest-of-e78368jw/pytest-1/output_files0/NEXT100_full_electron.h5', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/pytest/produce_output_test.py::test_create_nexus_output_file_new /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/pytest/produce_output_test.py::test_create_nexus_output_file_new returned '/tmp/pytest-of-e78368jw/pytest-1/output_files0/NEW_full_electron.h5', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/pytest/produce_output_test.py::test_create_nexus_output_file_flex100 /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/pytest/produce_output_test.py::test_create_nexus_output_file_flex100 returned '/tmp/pytest-of-e78368jw/pytest-1/output_files0/FLEX100_full_electron.h5', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/pytest/produce_output_test.py::test_create_nexus_output_file_demopp /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/pytest/produce_output_test.py::test_create_nexus_output_file_demopp returned '/tmp/pytest-of-e78368jw/pytest-1/output_files0/DEMOPP_full_electron_{run}.h5', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/pytest/produce_output_test.py::test_create_nexus_output_file_no_strings /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/_pytest/python.py:198: PytestReturnNotNoneWarning: Expected None, but tests/pytest/produce_output_test.py::test_create_nexus_output_file_no_strings returned '/tmp/pytest-of-e78368jw/pytest-1/output_files0/NEXT100_no_strings.h5', which will be an error in a future version of pytest. Did you mean to use `assert` instead of `return`? warnings.warn( tests/pytest/persistency_test.py: 60 warnings tests/pytest/sensitive_detectors_test.py: 9 warnings /home/e78368jw/anaconda3/envs/tests/lib/python3.8/site-packages/pandas/compat/_optional.py:117: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if distutils.version.LooseVersion(version) < minimum_version: -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ============================================= short test summary info ============================================== FAILED tests/pytest/macros_test.py::test_run_overlap_check - subprocess.CalledProcessError: Command '['/home/e78368jw/Documents/NEXT_CODE/NEXUS/nexus/scripts/../bin/nexus',... ============================= 1 failed, 37 passed, 163 warnings in 4269.07s (1:11:09) ==============================