@nextstrain

nextstrain

Real-time tracking of pathogen evolution

  • Pipeline components for real-time virus analysis

    Python 24 10 AGPL-3.0 1 issue needs help Updated Aug 16, 2018
  • Python 2 MIT Updated Aug 15, 2018
  • Web app for visualizing pathogen evolution

    JavaScript 26 9 AGPL-3.0 1 issue needs help Updated Aug 15, 2018
  • RethinkDB database to support real-time virus analysis

    Python 16 4 AGPL-3.0 Updated Aug 14, 2018
  • Docker image build for nextstrain/base

    Dockerfile 1 Updated Aug 13, 2018
  • A collection of modules for molecular epidemiology

    Python 1 1 Updated Aug 12, 2018
  • Static content about / docs / tutorial / blog posts

    JavaScript AGPL-3.0 Updated Aug 10, 2018
  • nextstrain.org server. Imports static site & auspice.

    JavaScript 1 Updated Jul 28, 2018
  • JavaScript MIT Updated Jul 26, 2018
  • Nextstrain build for Zika virus

    Python 1 Updated Jul 20, 2018
  • the repository used to build West Nile Virus for nextstrain

    Python Updated Jul 20, 2018
  • Nextstrain build for Lassa virus

    Python Updated Jul 20, 2018
  • Nextstrain build for Ebola virus

    Python 1 Updated Jul 17, 2018
  • White paper describing Nextstrain

    TeX 1 Updated Jul 9, 2018
  • Cleaning scripts for real-time pathogen analysis

    Python 1 Updated Jun 21, 2018
  • DB management, APIs, web portals etc.

    Python 1 Updated Apr 11, 2018
  • Build and deploy Nextstrain

    Python 4 AGPL-3.0 1 issue needs help Updated Feb 7, 2018
  • Another (awesome) data explorer for RethinkDB

    JavaScript 29 Updated Sep 23, 2017
  • interactive phylogenetic tree viewer

    JavaScript 4 3 MIT Updated May 1, 2017