Nextstrain

Real-time tracking of pathogen evolution

ncov-clades-schema Public
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain

JavaScript 5 4 2 3 Updated Nov 28, 2022
nextstrain.org Public
The Nextstrain website

JavaScript 82 AGPL-3.0 49 43 (1 issue needs help) 36 Updated Nov 29, 2022
auspice.us Public

JavaScript 11 7 2 4 Updated Nov 28, 2022
auspice Public
Web app for visualizing pathogen evolution

JavaScript 275 AGPL-3.0 165 188 (5 issues need help) 46 Updated Nov 28, 2022
seasonal-flu Public
Scripts. config, and snakefiles for seasonal-flu nextstrain builds

Python 23 18 19 2 Updated Nov 28, 2022
1password-teams-open-source Public
Get a free 1Password Teams membership for your open source project

0 569 0 0 Updated Nov 28, 2022
ncov Public template
Nextstrain build for novel coronavirus SARS-CoV-2

Python 1,309 MIT 394 59 35 Updated Nov 28, 2022
ncov-ingest Public
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.

Python 26 MIT 21 17 8 Updated Nov 28, 2022
ebola Public
Nextstrain build for Ebola virus

Python 2 7 0 0 Updated Nov 28, 2022
zika Public
Nextstrain build for Zika virus

Python 4 6 6 0 Updated Nov 28, 2022

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