nextstrain
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Pinned repositories
Pipeline components for real-time virus analysis
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
Web app for visualizing pathogen evolution
The Nextstrain command-line tool, providing access to Nextstrain components in a local environment with a minimum of fuss.
Nextstrain build for Lassa virus
Nextstrain build for Ebola virus
Nextstrain build for Zika virus
Nextstrain build for tuberculosis
Nextstrain build for mumps virus
Static content about / docs / tutorial / blog posts
Tutorial to visualize MERS-CoV tree from BEAST in auspice
Data and scripts for Zika virus tutorial
RethinkDB database to support real-time virus analysis
Docker image build for nextstrain/base
Narrative markdown files accessed via nextstrain.org/narratives/x
nextstrain.org server. Imports static site & auspice.
A collection of modules for molecular epidemiology
the repository used to build West Nile Virus for nextstrain
White paper describing Nextstrain
Cleaning scripts for real-time pathogen analysis
DB management, APIs, web portals etc.
Build and deploy Nextstrain
chateau
Forked from neumino/chateauAnother (awesome) data explorer for RethinkDB
interactive phylogenetic tree viewer
