@nextstrain

nextstrain

Real-time tracking of pathogen evolution

Pinned repositories

  1. auspice

    Web app for visualizing pathogen evolution

    JavaScript 27 9

  2. augur

    Pipeline components for real-time virus analysis

    Python 25 10

  • Pipeline components for real-time virus analysis

    Python 25 10 AGPL-3.0 1 issue needs help Updated Oct 22, 2018
  • Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    Python Updated Oct 21, 2018
  • Web app for visualizing pathogen evolution

    JavaScript 27 9 AGPL-3.0 1 issue needs help Updated Oct 21, 2018
  • The Nextstrain command-line tool, providing access to Nextstrain components in a local environment with a minimum of fuss.

    Python 2 MIT Updated Oct 12, 2018
  • Nextstrain build for Lassa virus

    Python Updated Oct 10, 2018
  • Nextstrain build for Ebola virus

    Python 1 Updated Oct 10, 2018
  • Nextstrain build for Zika virus

    Python 1 Updated Oct 10, 2018
  • Nextstrain build for tuberculosis

    Python Updated Oct 10, 2018
  • Nextstrain build for mumps virus

    Python Updated Oct 10, 2018
  • Static content about / docs / tutorial / blog posts

    JavaScript AGPL-3.0 Updated Oct 4, 2018
  • Tutorial to visualize MERS-CoV tree from BEAST in auspice

    Python Updated Sep 27, 2018
  • Data and scripts for Zika virus tutorial

    Python Updated Sep 17, 2018
  • RethinkDB database to support real-time virus analysis

    Python 18 4 AGPL-3.0 Updated Sep 15, 2018
  • Docker image build for nextstrain/base

    Dockerfile 2 Updated Sep 14, 2018
  • Narrative markdown files accessed via nextstrain.org/narratives/x

    Updated Aug 29, 2018
  • nextstrain.org server. Imports static site & auspice.

    JavaScript 1 Updated Aug 26, 2018
  • A collection of modules for molecular epidemiology

    Python 1 1 Updated Aug 12, 2018
  • JavaScript MIT Updated Jul 26, 2018
  • the repository used to build West Nile Virus for nextstrain

    Python Updated Jul 20, 2018
  • White paper describing Nextstrain

    TeX 1 Updated Jul 9, 2018
  • Cleaning scripts for real-time pathogen analysis

    Python 1 Updated Jun 21, 2018
  • DB management, APIs, web portals etc.

    Python 1 Updated Apr 11, 2018
  • Build and deploy Nextstrain

    Python 5 AGPL-3.0 1 issue needs help Updated Feb 7, 2018
  • Another (awesome) data explorer for RethinkDB

    JavaScript 29 Updated Sep 23, 2017
  • interactive phylogenetic tree viewer

    JavaScript 4 3 MIT Updated May 1, 2017
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