{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":248106936,"defaultBranch":"master","name":".github","ownerLogin":"nextstrain","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-03-18T01:03:50.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/22159334?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722900996.0","currentOid":""},"activityList":{"items":[{"before":"188f12021888c48675c96b45b47d9fb3b99dbd8f","after":"3298f528a91036cbe3e39e5c8a0d7c0414a69a07","ref":"refs/heads/check-external-links-29","pushedAt":"2024-08-06T20:45:14.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"},"commit":{"message":"Add `make linkcheck` step to `build-conda` and `build-pip`... [#29]\n\n...to check external links\n\nNote that this blocks on the various PRs attached to\nnextstrain/docs.nextstrain.org/#14 — those PRs should be merged before\nthis one.","shortMessageHtmlLink":"Add make linkcheck step to build-conda and build-pip... [#29]"}},{"before":null,"after":"188f12021888c48675c96b45b47d9fb3b99dbd8f","ref":"refs/heads/check-external-links-29","pushedAt":"2024-08-05T23:36:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"},"commit":{"message":"Add `make linkcheck` step, to check external links [#29]\n\nNote that this blocks on the various PRs attached to\nnextstrain/docs.nextstrain.org/#14 — those PRs should be merged before\nthis one.","shortMessageHtmlLink":"Add make linkcheck step, to check external links [#29]"}},{"before":"9f9582ede3044b5605a65eb1839c1e9e22b3b8ff","after":null,"ref":"refs/heads/trs/replace-gone-branch-name","pushedAt":"2024-07-18T23:27:51.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"}},{"before":"2e5550aa5f3598c983fdafea93561e911d0a337a","after":"429f042333c3cbfd2587d2942d283a57d3d252cc","ref":"refs/heads/master","pushedAt":"2024-07-18T23:27:49.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"Merge branch 'trs/replace-gone-branch-name'","shortMessageHtmlLink":"Merge branch 'trs/replace-gone-branch-name'"}},{"before":null,"after":"9f9582ede3044b5605a65eb1839c1e9e22b3b8ff","ref":"refs/heads/trs/replace-gone-branch-name","pushedAt":"2024-07-18T23:24:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"workflow-templates/debugging-runner: Replace a branch name that's gone\n\nI get to my TODOs eventually…\n\nThanks to @genehack for spotting this and pointing it out.","shortMessageHtmlLink":"workflow-templates/debugging-runner: Replace a branch name that's gone"}},{"before":"cc95abad87d1dd1e90f1d51aa76bfe81af1ce484","after":"edaf9232867c336877c4cf446674059e6fdd7bbb","ref":"refs/heads/victorlin/pathogen-repo-ci-build-runner","pushedAt":"2024-07-16T00:37:24.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Allow osx-arm64 for conda runner","shortMessageHtmlLink":"🚧 Allow osx-arm64 for conda runner"}},{"before":"d4fa54a815bfd1c332ee014ba4b308264f3ffee2","after":"cc95abad87d1dd1e90f1d51aa76bfe81af1ce484","ref":"refs/heads/victorlin/pathogen-repo-ci-build-runner","pushedAt":"2024-07-16T00:08:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Allow osx-arm64 for conda runner","shortMessageHtmlLink":"🚧 Allow osx-arm64 for conda runner"}},{"before":"50de02b3517ac1659abd4b154d1afb2a98fd85be","after":"d4fa54a815bfd1c332ee014ba4b308264f3ffee2","ref":"refs/heads/victorlin/pathogen-repo-ci-build-runner","pushedAt":"2024-07-15T23:56:03.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Allow specifying runner for build job","shortMessageHtmlLink":"🚧 Allow specifying runner for build job"}},{"before":"3d299d9e81a7138621d2af5c06fa3f88788f5fc8","after":"50de02b3517ac1659abd4b154d1afb2a98fd85be","ref":"refs/heads/victorlin/pathogen-repo-ci-build-runner","pushedAt":"2024-07-15T23:37:25.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Allow specifying runner for build job","shortMessageHtmlLink":"🚧 Allow specifying runner for build job"}},{"before":null,"after":"3d299d9e81a7138621d2af5c06fa3f88788f5fc8","ref":"refs/heads/victorlin/pathogen-repo-ci-build-runner","pushedAt":"2024-07-15T23:30:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"victorlin","name":"Victor Lin","path":"/victorlin","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13424970?s=80&v=4"},"commit":{"message":"🚧 Allow specifying runner for build job","shortMessageHtmlLink":"🚧 Allow specifying runner for build job"}},{"before":"e5d5d4fe054e7dc3414d325b2407c6bf5e678434","after":null,"ref":"refs/heads/pathogen-repo-build-grab-bag","pushedAt":"2024-06-21T19:40:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"joverlee521","name":"Jover Lee","path":"/joverlee521","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40774762?s=80&v=4"}},{"before":"18e3f79c0f63349fd4324959a16b6fe5bc5b477b","after":"2e5550aa5f3598c983fdafea93561e911d0a337a","ref":"refs/heads/master","pushedAt":"2024-06-21T19:40:09.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"joverlee521","name":"Jover Lee","path":"/joverlee521","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40774762?s=80&v=4"},"commit":{"message":"Merge pull request #101 from nextstrain/pathogen-repo-build-grab-bag\n\n`pathogen-repo-build` improvements","shortMessageHtmlLink":"Merge pull request #101 from nextstrain/pathogen-repo-build-grab-bag"}},{"before":"d8640df6b0a0a2573c2c7ffa0630b92bd25a1e52","after":"e5d5d4fe054e7dc3414d325b2407c6bf5e678434","ref":"refs/heads/pathogen-repo-build-grab-bag","pushedAt":"2024-06-21T19:25:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"joverlee521","name":"Jover Lee","path":"/joverlee521","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40774762?s=80&v=4"},"commit":{"message":"CI: Verify pathogen-repo-build's aws-batch-job-id output","shortMessageHtmlLink":"CI: Verify pathogen-repo-build's aws-batch-job-id output"}},{"before":null,"after":"d8640df6b0a0a2573c2c7ffa0630b92bd25a1e52","ref":"refs/heads/pathogen-repo-build-grab-bag","pushedAt":"2024-06-18T23:09:10.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"joverlee521","name":"Jover Lee","path":"/joverlee521","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40774762?s=80&v=4"},"commit":{"message":"pathogen-repo-build: Add output `aws-batch-job-id`\n\nIf the workflow is run as a reusable workflow with the `aws-batch`\nruntime, the workflow will output the AWS Batch job id.\n\nThis is useful for re-attaching to a complete AWS Batch job to\ndownload the results and use them in subsequent jobs.\n\nResolves https://github.com/nextstrain/.github/issues/79","shortMessageHtmlLink":"pathogen-repo-build: Add output aws-batch-job-id"}},{"before":"00085b8a5c2e936b6bdb45384154e92069ad66c1","after":null,"ref":"refs/heads/trs/pathogen-repo-ci/keep-going-2","pushedAt":"2024-06-14T23:00:51.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"}},{"before":"f2486c9553fd9f06f5ddb81fcde27d9a4a7a741a","after":"18e3f79c0f63349fd4324959a16b6fe5bc5b477b","ref":"refs/heads/master","pushedAt":"2024-06-14T23:00:48.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"Merge branch 'trs/pathogen-repo-ci/keep-going-2'","shortMessageHtmlLink":"Merge branch 'trs/pathogen-repo-ci/keep-going-2'"}},{"before":null,"after":"00085b8a5c2e936b6bdb45384154e92069ad66c1","ref":"refs/heads/trs/pathogen-repo-ci/keep-going-2","pushedAt":"2024-06-14T22:49:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Use status functions in conditionals instead of continue-on-error: true\n\nWhile \"continue-on-error: true\" resulted in the behaviour we wanted, it\nalso meant the job step status indicators were misleading: even when an\ningest/phylogenetic/nextclade step failed, the UI showed a check mark\nfor them in the logs. Instead of masking failures to keep going in the\nface of errors, override the default success() conditional by specifying\nour own conditions on a status expression.\n\nRelated-to: ","shortMessageHtmlLink":"pathogen-repo-ci: Use status functions in conditionals instead of con…"}},{"before":"a54bf160c7d4428b41f277ae1d1b46138a3ffe43","after":null,"ref":"refs/heads/trs/pathogen-repo-ci/keep-going","pushedAt":"2024-06-14T22:36:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"}},{"before":"73e2b7566015dd3d763d49284253672cb2fdb188","after":"f2486c9553fd9f06f5ddb81fcde27d9a4a7a741a","ref":"refs/heads/master","pushedAt":"2024-06-14T22:35:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"Merge branch 'trs/pathogen-repo-ci/keep-going'","shortMessageHtmlLink":"Merge branch 'trs/pathogen-repo-ci/keep-going'"}},{"before":"d46b0d639a017e76c20fbabc439e008a41fb4394","after":null,"ref":"refs/heads/trs/pathogen-repo-ci/skip-it-skip-it","pushedAt":"2024-06-14T06:31:58.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"}},{"before":"116404e69815c63855b83f22dd88e496d442d761","after":"73e2b7566015dd3d763d49284253672cb2fdb188","ref":"refs/heads/master","pushedAt":"2024-06-14T06:31:56.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"Merge branch 'trs/pathogen-repo-ci/skip-it-skip-it'","shortMessageHtmlLink":"Merge branch 'trs/pathogen-repo-ci/skip-it-skip-it'"}},{"before":null,"after":"a54bf160c7d4428b41f277ae1d1b46138a3ffe43","ref":"refs/heads/trs/pathogen-repo-ci/keep-going","pushedAt":"2024-06-14T06:11:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Keep running even if one of the pathogen workflows fails\n\nIn testing it's helpful to report all test results even in the face of\nan early failure to reduce the chances of playing whack-a-mole with\nunreported failures once when you fix the first failure. For example,\nwe want to know if the phylogenetic workflow fails even when the ingest\nworkflow run before it fails.","shortMessageHtmlLink":"pathogen-repo-ci: Keep running even if one of the pathogen workflows …"}},{"before":"efb55198c9a2e98a395d60c818d1b0913905ec02","after":"d46b0d639a017e76c20fbabc439e008a41fb4394","ref":"refs/heads/trs/pathogen-repo-ci/skip-it-skip-it","pushedAt":"2024-06-14T06:11:25.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub workflow summary\n\nA good suggestion by @joverlee521 in review.¹\n\n¹ ","shortMessageHtmlLink":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub wo…"}},{"before":"89092f6c755d3e61afe920f674531d294bf22223","after":"efb55198c9a2e98a395d60c818d1b0913905ec02","ref":"refs/heads/trs/pathogen-repo-ci/skip-it-skip-it","pushedAt":"2024-06-14T06:08:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub workflow summary\n\nA good suggestion by @joverlee521 in review.¹\n\n¹ ","shortMessageHtmlLink":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub wo…"}},{"before":"d279c5c9406efeedfaf91836ae92e17dd6d9bbb8","after":"89092f6c755d3e61afe920f674531d294bf22223","ref":"refs/heads/trs/pathogen-repo-ci/skip-it-skip-it","pushedAt":"2024-06-14T06:05:22.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub workflow summary\n\nA good suggestion by @joverlee521 in review.¹\n\n¹ ","shortMessageHtmlLink":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub wo…"}},{"before":"5104031ea62c33929a7edd8bfd7117e4583922cc","after":"d279c5c9406efeedfaf91836ae92e17dd6d9bbb8","ref":"refs/heads/trs/pathogen-repo-ci/skip-it-skip-it","pushedAt":"2024-06-14T05:16:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"tsibley","name":"Thomas Sibley","path":"/tsibley","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/79913?s=80&v=4"},"commit":{"message":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub workflow summary\n\nA good suggestion by @joverlee521 in review.¹\n\n¹ ","shortMessageHtmlLink":"pathogen-repo-ci: Show pathogen workflow conclusions in the GitHub wo…"}},{"before":"fea28cba35ef32f95b36151ebf774d9615cdb05b","after":null,"ref":"refs/heads/bring-tha-noise-92","pushedAt":"2024-06-13T17:43:08.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"}},{"before":"7f910e6c7d3d475500b063e4861a26b63c168cb8","after":"116404e69815c63855b83f22dd88e496d442d761","ref":"refs/heads/master","pushedAt":"2024-06-13T17:43:07.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"},"commit":{"message":"Merge pull request #95 from nextstrain/bring-tha-noise-92\n\nMake `pathogen-repo-ci` fail when config is missing or no builds are attempted","shortMessageHtmlLink":"Merge pull request #95 from nextstrain/bring-tha-noise-92"}},{"before":"df99e08049dd7ae99fd307cbc9c56b6fed74bd56","after":"fea28cba35ef32f95b36151ebf774d9615cdb05b","ref":"refs/heads/bring-tha-noise-92","pushedAt":"2024-06-13T17:13:56.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"},"commit":{"message":"Remove `test-pathogen-repo-ci-no-example-data` job [#92]\n\nThis is testing an outdated scenario — the `pathogen-repo-ci` workflow\nno longer cares whether you have example data or not; only that you\nhave a Snakefile and a CI-specific build config in the right spot.","shortMessageHtmlLink":"Remove test-pathogen-repo-ci-no-example-data job [#92]"}},{"before":"1bad99eb83c71ed07f40751f5a1c4ca86d9a0369","after":"df99e08049dd7ae99fd307cbc9c56b6fed74bd56","ref":"refs/heads/bring-tha-noise-92","pushedAt":"2024-06-13T00:36:25.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"genehack","name":"John SJ Anderson","path":"/genehack","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42126?s=80&v=4"},"commit":{"message":"Remove `test-pathogen-repo-ci-no-example-data` job [#92]\n\nThis is testing an outdated scenario — the `pathogen-repo-ci` workflow\nno longer cares whether you have example data or not; only that you\nhave a Snakefile and a CI-specific build config in the right spot.","shortMessageHtmlLink":"Remove test-pathogen-repo-ci-no-example-data job [#92]"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEk4QqugA","startCursor":null,"endCursor":null}},"title":"Activity · nextstrain/.github"}