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Turn off mutation frequencies

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sidneymbell committed Nov 9, 2017
1 parent ac5787a commit c3ba4fc697e9676940a75359224cb1da7187e638
Showing with 1 addition and 2 deletions.
  1. +1 −2 builds/dengue/dengue.process.py
@@ -45,11 +45,10 @@ def collect_args():
# parser.add_argument('-j', '--json', default=None, nargs='+', type=str, help="Accepts path to prepared JSON(s); overrides -s argument")
parser.add_argument('-s', '--serotypes', default=["multiple"], nargs='+', type=str, choices=['denv1', 'denv2', 'denv3', 'denv4', 'all', 'multiple'],
help="Look for prepared JSON(s) like ./prepared/dengue_SEROTYPE.json; 'multiple' will run all five builds. Default='multiple'")
parser.add_argument('--no_mut_freqs', default=False, action='store_true', help="skip mutation frequencies")
parser.add_argument('--no_mut_freqs', default=True, action='store_true', help="skip mutation frequencies")
parser.add_argument('--no_tree_freqs', default=False, action='store_true', help="skip tree (clade) frequencies")
parser.add_argument('--no_titers', default=False, action='store_true', help="skip titer models")
parser.set_defaults(json = None)
return parser

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