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Branch: master
Commits on Dec 11, 2019
  1. Revert "add brief description to changelog with links to release notes"

    rneher authored and trvrb committed Dec 10, 2019
    This reverts commit df5316b.
  2. Revert "version bump to 6.0.0 -- remove -beta"

    rneher authored and trvrb committed Dec 10, 2019
    This reverts commit cfb5601.
Commits on Dec 10, 2019
  1. version bump to 6.0.0 -- remove -beta

    rneher committed Dec 10, 2019
  2. add brief description to changelog with links to release notes

    rneher committed Dec 10, 2019
  3. flesh out release notes

    rneher committed Dec 10, 2019
  4. update migration guide/prettify to link to parse, add that root-seque…

    rneher committed Dec 10, 2019
    …nce equals reference sequence for vcf, remove unused files
Commits on Nov 19, 2019
  1. Merge branch 'repeat_sample' into v6

    rneher committed Nov 19, 2019
Commits on Nov 8, 2019
  1. add to release notes

    rneher committed Nov 8, 2019
  2. Merge branch 'v6' into repeat_sample

    rneher committed Nov 8, 2019
  3. update faqs to be explicit about tsv as lat_long and color file

    rneher committed Nov 8, 2019
  4. harmonized handling of output and output-node-data flag

    rneher committed Nov 8, 2019
  5. harmonize flags to specify output files. Everything that is a node-da…

    rneher committed Nov 8, 2019
    …ta-json should now be specified as with deprecated
  6. adapted tb tutorial to v6

    rneher committed Nov 8, 2019
  7. set version to v6-beta

    rneher committed Nov 8, 2019
  8. added command pattern description

    rneher committed Nov 8, 2019
Commits on Oct 19, 2019
  1. added note to v6 docs on upgrading

    rneher committed Oct 19, 2019
  2. merged docs into v6

    rneher committed Oct 19, 2019
  3. Merge branch 'more_docs'

    rneher committed Oct 19, 2019
  4. docs: edit pass on docs

    rneher committed Oct 19, 2019
Commits on Oct 18, 2019
  1. parse: catch empty words in captialization routine if input contains …

    rneher committed Oct 18, 2019
    …multiple underscores in row or begins/ends on underscores
Commits on Oct 15, 2019
  1. docs: changed headings in docs.

    rneher committed Oct 15, 2019
  2. added clades page

    rneher committed Oct 15, 2019
Commits on Oct 14, 2019
  1. added docs on json format

    rneher committed Oct 14, 2019
  2. added extra text to docs

    rneher committed Oct 14, 2019
  3. moved examples to top-level, next to tutorials

    rneher committed Oct 14, 2019
Commits on Oct 13, 2019
  1. added tutorials

    rneher committed Oct 13, 2019
Commits on Oct 12, 2019
  1. better error messages when parsing tsv's, lower case frequency weight…

    rneher committed Oct 12, 2019
    … keys
Commits on Oct 11, 2019
  1. apply same quick fix for tsv/non-tsv parsing for default color map

    rneher committed Oct 11, 2019
  2. duplicate lat long and color entries for places that have spaces

    rneher committed Oct 11, 2019
Commits on Oct 10, 2019
  1. parse: check whether prettify-fields flag is given

    rneher committed Oct 10, 2019
Commits on Oct 3, 2019
  1. guard against missing meta data and check for type==str before pretti…

    rneher committed Oct 3, 2019
    …fying
  2. test on zika

    rneher committed Oct 3, 2019
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