From d4364c7f11f74b24d5f39dc32a84882dee9191f5 Mon Sep 17 00:00:00 2001 From: Trevor Bedford Date: Thu, 21 Jan 2021 16:54:26 -0800 Subject: [PATCH] Update get-data script Update get-data to grab tip-frequencies for ncov datasets. --- scripts/get-data.sh | 10 +++++++--- 1 file changed, 7 insertions(+), 3 deletions(-) diff --git a/scripts/get-data.sh b/scripts/get-data.sh index e4120450b..9230ab021 100755 --- a/scripts/get-data.sh +++ b/scripts/get-data.sh @@ -41,9 +41,13 @@ data_files=( "enterovirus_d68_genome_meta.json" "enterovirus_d68_genome_tree.json" \ "enterovirus_d68_vp1_meta.json" "enterovirus_d68_vp1_tree.json" \ # The ncov datasets. It's not worth downloading them all, just grab the latest - "ncov_global.json" "ncov_africa.json" "ncov_oceania.json" "ncov_asia.json" \ - "ncov_europe.json" "ncov_north-america.json" "ncov_south-america.json" \ - "ncov_non-subsampled.json" \ + "ncov_global.json" "ncov_global_tip-frequencies.json" \ + "ncov_africa.json" "ncov_africa_tip-frequencies.json" \ + "ncov_asia.json" "ncov_asia_tip-frequencies.json" \ + "ncov_europe.json" "ncov_europe_tip-frequencies.json" \ + "ncov_north-america.json" "ncov_north-america_tip-frequencies.json" \ + "ncov_oceania.json" "ncov_oceania_tip-frequencies.json" \ + "ncov_south-america.json" "ncov_south-america_tip-frequencies.json" \ # Adding the ncov datasets which are required by the narratives so they can be viewed locally # (Note that these all include the date of upload in the filename) "ncov_2020-01-23.json" "ncov_2020-01-25.json" "ncov_2020-01-26.json" "ncov_2020-01-30.json" \