diff --git a/builds/DENGUE.md b/builds/DENGUE.md index 8d01040..aaec81b 100644 --- a/builds/DENGUE.md +++ b/builds/DENGUE.md @@ -11,6 +11,14 @@ 3. Upload to vdb database * `python vdb/dengue_upload.py -db vdb -v dengue --fname results.tbl --ftype tsv` -## Download documents from VDB +## Download sequence documents from VDB + * `python vdb/dengue_download.py` # all serotypes together -* `python vdb/dengue_download.py --select serotype:2` # just serotype 2 sequences +* `python vdb/dengue_download.py --select serotype:1` # just serotype 1 +* `python vdb/dengue_download.py --select serotype:2` # just serotype 2 +* `python vdb/dengue_download.py --select serotype:3` # just serotype 3 +* `python vdb/dengue_download.py --select serotype:4` # just serotype 4 + +## Download titer documents from TDB + +* `python tdb/download.py -db tdb -v dengue --fstem dengue`