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Update dengue build notes
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trvrb committed Sep 24, 2017
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12 changes: 10 additions & 2 deletions builds/DENGUE.md
Expand Up @@ -11,6 +11,14 @@
3. Upload to vdb database 3. Upload to vdb database
* `python vdb/dengue_upload.py -db vdb -v dengue --fname results.tbl --ftype tsv` * `python vdb/dengue_upload.py -db vdb -v dengue --fname results.tbl --ftype tsv`


## Download documents from VDB ## Download sequence documents from VDB

* `python vdb/dengue_download.py` # all serotypes together * `python vdb/dengue_download.py` # all serotypes together
* `python vdb/dengue_download.py --select serotype:2` # just serotype 2 sequences * `python vdb/dengue_download.py --select serotype:1` # just serotype 1
* `python vdb/dengue_download.py --select serotype:2` # just serotype 2
* `python vdb/dengue_download.py --select serotype:3` # just serotype 3
* `python vdb/dengue_download.py --select serotype:4` # just serotype 4

## Download titer documents from TDB

* `python tdb/download.py -db tdb -v dengue --fstem dengue`

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