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Remove deprecated mumps instructions

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trvrb committed Jan 5, 2018
1 parent 98edf26 commit 48e1d82ae6836ecbcd929098030905d520f73766
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## Download data from ViPR
_This is deprecated. Instead download data from Genbank below and upload directly._
* Goto [ViPR Paramyxo](https://www.viprbrc.org/brc/vipr_genome_search.spg?method=ShowCleanSearch&decorator=paramyxo)
* Type "mumps" in search
* Select min length of 5000
* Search
* Select all -> Download
* Select "Genome FASTA" with custom format. Fields:
1. Genbank Accession
2. Strain Name
3. Segment
4. Date
5. Host
6. Country
7. Subtype
8. Virus Species
* Copy `GenomeFastaResults.fasta` file to `fauna/data/GenomeFastaResults.fasta`
## Clean FASTA
_This is deprecated. Instead download data from Genbank below and upload directly._
```
cd fauna
python vdb/mumps_preprocess_fasta.py --vipr
```
The cleaned fasta is now available at `data/mumps_vipr.fasta`
## Download data from Genbank
* [Genbank search URL](https://www.ncbi.nlm.nih.gov/nuccore?term=mumps%5Btitle%5D%20AND%20viruses%5Bfilter%5D%20AND%20%28%225000%22%5BSLEN%5D%20%3A%20%2220000%22%5BSLEN%5D%29&cmd=DetailsSearch)

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