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Add catch for CDC data without ferret ids.

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barneypotter24 committed Dec 4, 2017
1 parent 154b8b3 commit e94fc96da1572b65565d1b48650e22d2e4d28c03
Showing with 12 additions and 0 deletions.
  1. +12 −0 tdb/cdc_upload.py
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@@ -89,6 +89,18 @@ def format_titer(self, meas):
else:
meas['titer'] = None
def format_serum_sample(self,meas):
'''
Format serum sample attribute for the measurements, so that there is
not a specific organism used for HI assays.
'''
if not meas['serum_id']:
if 'lot_number' in meas.keys():
meas['serum_id'] = 'L' + str(meas['lot_number'])
# print 'new serum id is %s' % (meas['serum_id'])
# else:
# print 'old serum id is %s' % (meas['serum_id'])
def remove_fields(self, meas):
'''
Remove unnecessary fields provided in CDC titer tables.

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