diff --git a/config/exclude.txt b/config/exclude.txt index 1fb633dfb..f4f9484bb 100644 --- a/config/exclude.txt +++ b/config/exclude.txt @@ -39,10 +39,10 @@ Wuhan/HBCDC-HB-04/2019 # Missing mutations Netherlands/Oisterwijk_1364072/2020 Netherlands/Utrecht_1364066/2020 -Ireland/COR-20134/2020 # Confusing phylogeography Netherlands/Rotterdam_1363790/2020 +Netherlands/NoordBrabant_5/2020 # Missing precise date Netherlands/NoordBrabant_34/2020 @@ -60,6 +60,8 @@ Wuhan/IVDC-HB-envF54/2020 Wuhan/WH02/2019 Guangzhou/GZMU0016/2020 Guangzhou/GZMU0047/2020 +HongKong/CUHK2/2020 +Wales/PHW06/2020 # Excluding because seem to be too divergent - worth double checking Shandong/LY002/2020 diff --git a/config/lat_longs.tsv b/config/lat_longs.tsv index d1c2b6c9b..587789b8f 100644 --- a/config/lat_longs.tsv +++ b/config/lat_longs.tsv @@ -7,6 +7,7 @@ location Berlicum 51.6789 5.4012 location Blaricum 52.2727 5.2481 location Boston 42.354750 -71.061299 location Brasilia -15.814189 -47.875543 +location Brisbane -27.484246 153.026118 location Budapest 47.482728 19.084269 location California 36.357039 -119.690182 location Cardiff 51.476291 -3.178964 @@ -16,6 +17,7 @@ location Chicago 41.858966 -87.637242 location Chongqing 29.858721 107.375623 location Chungcheongnam 36.685948 126.799198 location Clayton -37.915200 145.127165 +location Clark County 45.778260 -122.491540 location Coevorden 52.6614 6.7411 location Compiègne 49.408175 2.842839 location Contamines 45.820585 6.727730 @@ -32,6 +34,7 @@ location Feira de Santana -12.2598 -38.9675 location Foshan 23.018766 113.121428 location Garches 48.8461 2.1887 location Gold Coast -28.019726 153.398160 +location Grant County 47.163630 -119.524786 location Guangdong 23.615762 114.483257 location Guangzhou 23.123972 113.292889 location Gyeonggi 37.397957 127.380864 @@ -65,6 +68,7 @@ location Loon 51.379197 5.443200 location Loon op zand 51.625527 5.070262 location Longjumeau 48.6931 2.2948 location Los Angeles 34.029267 -118.242865 +location Manaus -3.126424 -60.019807 location Melbourne -37.839042 145.076343 location Milan 45.474 9.177 location Munich 48.155742 11.549380 @@ -87,6 +91,7 @@ location Reims 49.253754 4.035860 location Rennes 48.1173 1.6778 location Riyadh 24.705304 46.738279 location Rio de Janeiro -22.89445 -43.2099 +location Rockhampton -23.378823 150.509921 location Rome 41.881118 12.492817 location Rotterdam 51.9244 4.4777 location Rouen 49.4432 1.1000 @@ -112,6 +117,7 @@ location Thanh Hoa 19.805359 105.784515 location Tianmen 30.6510 113.1556 location Tilburg 51.571419 5.052759 location Tokyo 35.683441 139.766131 +location Umatilla County 45.648981 -118.720688 location Utrecht 52.0907 5.1214 location Valencia 39.337 -0.354 location Vila Velha -20.3472 -40.2823 @@ -127,6 +133,7 @@ location Zhuhai 22.271346 113.562879 division Aargau 47.420629 8.172097 division Aichi 35.067543 137.334061 +division Amazonas State -5.423668 -64.567836 division Andel 51.7851 5.0549 division Anhui 31.754331 117.211441 division Arizona 34.220707 -111.657462 diff --git a/config/ordering.tsv b/config/ordering.tsv index 180c3a3a7..fbe348172 100644 --- a/config/ordering.tsv +++ b/config/ordering.tsv @@ -36,6 +36,8 @@ location Singapore location Gold Coast location Sydney location Melbourne +location Brisbane +location Rockhampton location Clayton location Auckland location Riyadh @@ -98,8 +100,9 @@ location Helsinki location Sao Paulo location Brasilia location Rio de Janeiro -location feira de santana -location vila velha +location Manaus +location Feira de Santana +location Vila Velha location Mexico City location King County location Snohomish County @@ -113,8 +116,11 @@ location Los Angeles location California location San Francisco location San Diego County +location Grant County location Snohomish County location King County +location Clark County +location Umatilla County location Phoenix location Chicago location Illinois @@ -252,6 +258,7 @@ division Espirito Santo division Bahia division Rio de Janeiro division Distrito Federal +division Amazonas State division Panama City division Mexico City division USA @@ -280,6 +287,7 @@ country India country Vietnam country Cambodia country Thailand +country Malaysia country Singapore country Australia country New Zealand diff --git a/config/weights.tsv b/config/weights.tsv index 8f35a6bbf..4832fc400 100644 --- a/config/weights.tsv +++ b/config/weights.tsv @@ -12,6 +12,9 @@ division_exposure California 1.0 division_exposure Chongqing 10.0 division_exposure Chungcheongnam 1.0 division_exposure Comunitat Valenciana 1.0 +division_exposure Connecticut 1.0 +division_exposure Diamond Princess 1.0 +division_exposure Distrito Federal 1.0 division_exposure Drenthe 1.0 division_exposure Dublin 1.0 division_exposure England 1.0 @@ -19,6 +22,7 @@ division_exposure Finland 1.0 division_exposure Flanders 1.0 division_exposure Flevoland 1.0 division_exposure Fujian 10.0 +division_exposure Galicia 1.0 division_exposure Gelderland 1.0 division_exposure Geneva 1.0 division_exposure Grand Est 1.0 @@ -43,10 +47,12 @@ division_exposure Kinshasa 1.0 division_exposure Kyoto 1.0 division_exposure Lapland 1.0 division_exposure Lazio 1.0 +division_exposure Leuven 1.0 division_exposure Limburg 1.0 division_exposure Limerick 1.0 division_exposure Lombardy 20.0 division_exposure Luxembourg 1.0 +division_exposure Madrid 1.0 division_exposure Massachusetts 1.0 division_exposure Mexico City 1.0 division_exposure Minnesota 1.0 @@ -58,6 +64,7 @@ division_exposure Normandie 1.0 division_exposure North Brabant 1.0 division_exposure North Holland 1.0 division_exposure North Rhine Westphalia 1.0 +division_exposure Northern Ireland 1.0 division_exposure Ontario 1.0 division_exposure Osaka 1.0 division_exposure Overijssel 1.0 diff --git a/data/metadata.tsv b/data/metadata.tsv index 208a37158..ef8f4ee8e 100644 --- a/data/metadata.tsv +++ b/data/metadata.tsv @@ -4,6 +4,7 @@ Anhui/SZ005/2020 ncov EPI_ISL_413485 ? 2020-01-24 Asia China Anhui Anhui Suzhou Australia/NSW01/2020 ncov EPI_ISL_407893 ? 2020-01-24 Oceania Australia New South Wales Hubei Sydney genome 29782 Human ? Male Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-02-06 Australia/NSW02/2020 ncov EPI_ISL_408976 ? 2020-01-22 Oceania Australia New South Wales New South Wales Sydney genome 29741 Human ? Male Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-02-11 Australia/NSW03/2020 ncov EPI_ISL_408977 ? 2020-01-25 Oceania Australia New South Wales New South Wales Sydney genome 29782 Human ? Female Serology, Virology and OTDS Laboratories (SAViD), NSW Health Pathology Randwick NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Centre for Infectious Diseases and Microbiology Laboratory Services; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-02-11 +Australia/NSW04/2020 ncov EPI_ISL_417030 ? 2020-01-24 Oceania Australia New South Wales New South Wales Sydney genome 29782 Human ? Male Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-03-24 Australia/NSW05/2020 ncov EPI_ISL_412975 ? 2020-02-28 Oceania Australia New South Wales Iran Sydney genome 29782 Human ? Male Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-03-02 Australia/NSW06/2020 ncov EPI_ISL_413213 ? 2020-02-29 Oceania Australia New South Wales Iran Sydney genome 29782 Human ? Female Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-03-04 Australia/NSW07/2020 ncov EPI_ISL_413214 ? 2020-02-29 Oceania Australia New South Wales New South Wales Sydney genome 29782 Human ? Male Centre for Infectious Diseases and Microbiology Laboratory Services NSW Health Pathology - Institute of Clinical Pathology and Medical Research; Westmead Hospital; University of Sydney et al https://www.gisaid.org ? 2020-03-04 @@ -19,6 +20,9 @@ Australia/QLD02/2020 ncov EPI_ISL_407896 ? 2020-01-30 Oceania Australia Queensla Australia/QLD03/2020 ncov EPI_ISL_410717 ? 2020-02-05 Oceania Australia Queensland Queensland Gold Coast genome 29865 Human ? Male Pathology Queensland Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-02-18 Australia/QLD04/2020 ncov EPI_ISL_410718 ? 2020-02-05 Oceania Australia Queensland Queensland Gold Coast genome 29865 Human ? Male Pathology Queensland Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-02-18 Australia/QLD09/2020 ncov EPI_ISL_414414 ? 2020-02-29 Oceania Australia Queensland Queensland Gold Coast genome 29864 Human ? Female Pathology Queensland Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-03-12 +Australia/QLDID919/2020 ncov EPI_ISL_417031 ? 2020-03-11 Oceania Australia Queensland Queensland Gold Coast genome 29864 Human ? Female Pathology Queensland Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-03-24 +Australia/QLDID920/2020 ncov EPI_ISL_417032 ? 2020-03-11 Oceania Australia Queensland Queensland Rockhampton genome 29864 Human ? Male Rockhampton Base Hospital Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-03-24 +Australia/QLDID921/2020 ncov EPI_ISL_417033 ? 2020-03-11 Oceania Australia Queensland Queensland Brisbane genome 29865 Human ? Female Sullivan Nicolaides Pathology Public Health Virology Laboratory et al https://www.gisaid.org ? 2020-03-24 Australia/VIC01/2020 ncov EPI_ISL_406844 MT007544 2020-01-25 Oceania Australia Victoria Hubei Clayton genome 29893 Human ? Male Monash Medical Centre Collaboration between the University of Melbourne at The Peter Doherty Institute for Infection and Immunity, and the Victorian Infectious Disease Reference Laboratory et al https://www.gisaid.org ? 2020-01-31 Australia/VIC02/2020 ncov EPI_ISL_416410 ? 2020-01-24 Oceania Australia Victoria Victoria Melbourne genome 29865 Human ? Male Victorian Infectious Diseases Reference Laboratory (VIDRL) Victorian Infectious Diseases Reference Laboratory and Microbiological Diagnostic Unit Public Health Laboratory, Doherty Institute et al https://www.gisaid.org ? 2020-03-20 Australia/VIC03/2020 ncov EPI_ISL_416411 ? 2020-01-25 Oceania Australia Victoria Victoria Melbourne genome 29899 Human ? Male Victorian Infectious Diseases Reference Laboratory (VIDRL) Victorian Infectious Diseases Reference Laboratory and Microbiological Diagnostic Unit Public Health Laboratory, Doherty Institute et al https://www.gisaid.org ? 2020-03-20 @@ -72,9 +76,10 @@ Belgium/ULG-7019/2020 ncov EPI_ISL_417025 ? 2020-03-15 Europe Belgium Liège Li Belgium/UMF-03025/2020 ncov EPI_ISL_416472 ? 2020-03-02 Europe Belgium Kessel-Lo Kessel-Lo genome 29845 Human ? Male KU Leuven, Clinical and Epidemiological Virology KU Leuven, Clinical and Epidemiological Virology et al https://www.gisaid.org ? 2020-03-22 Belgium/VAG-03013/2020 ncov EPI_ISL_415155 ? 2020-03-01 Europe Belgium Huldenberg Huldenberg genome 29843 Human ? Female KU Leuven, Clinical and Epidemiological Virology KU Leuven, Clinical and Epidemiological Virology et al https://www.gisaid.org ? 2020-03-16 Belgium/VLM-03011/2020 ncov EPI_ISL_415153 ? 2020-03-03 Europe Belgium Huldenberg Huldenberg genome 29843 Human ? Female KU Leuven, Clinical and Epidemiological Virology KU Leuven, Clinical and Epidemiological Virology et al https://www.gisaid.org ? 2020-03-16 -Brazil-RJ/314/2020 ncov EPI_ISL_414045 ? 2020-03-04 South America Brazil Rio de Janeiro Rio de Janeiro Rio de Janeiro genome 29768 Human ? Female LACEN RJ - Laboratorio Central de Saude Publica Noel Nutels Instituto Oswaldo Cruz FIOCRUZ - Laboratory of Respiratory Viruses and Measles (LVRS) et al https://www.gisaid.org ? 2020-03-11 +Brazil/AMBR-02/2020 ncov EPI_ISL_417034 ? 2020-03-16 South America Brazil Amazonas State Amazonas State Manaus genome 29789 Human ? Male Laboratorio de Ecologia de Doencas Transmissiveis na Amazonia, Instituto Leonidas e Maria Deane - Fiocruz Amazonia Laboratorio de Ecologia de Doencas Transmissiveis na Amazonia, Instituto Leonidas e Maria Deane - Fiocruz Amazonia et al https://www.gisaid.org ? 2020-03-24 Brazil/BA-312/2020 ncov EPI_ISL_415105 ? 2020-03-04 South America Brazil Bahia Bahia Feira de Santana genome 29768 Human ? Female Laboratorio Central de Saude Publica Professor Goncalo Moniz LACEN/BA Instituto Oswaldo Cruz FIOCRUZ - Laboratory of Respiratory Viruses and Measles (LVRS) et al https://www.gisaid.org ? 2020-03-16 Brazil/ES-225/2020 ncov EPI_ISL_415128 ? 2020-02-29 South America Brazil Espirito Santo Espirito Santo Vila Velha genome 29762 Human ? Female LACEN/ES - Laboratorio Central de Saude Publica do Espirito Santo Instituto Oswaldo Cruz FIOCRUZ - Laboratory of Respiratory Viruses and Measles (LVRS) et al https://www.gisaid.org ? 2020-03-16 +Brazil/RJ-314/2020 ncov EPI_ISL_414045 ? 2020-03-04 South America Brazil Rio de Janeiro Rio de Janeiro Rio de Janeiro genome 29768 Human ? Female LACEN RJ - Laboratorio Central de Saude Publica Noel Nutels Instituto Oswaldo Cruz FIOCRUZ - Laboratory of Respiratory Viruses and Measles (LVRS) et al https://www.gisaid.org ? 2020-03-11 Brazil/SPBR-01/2020 ncov EPI_ISL_412964 ? 2020-02-25 South America Brazil Sao Paulo Lombardy Sao Paulo genome 29891 Human ? Male Hospital Israelita Albert Einstein Instituto Adolfo Lutz Interdisciplinary Procedures Center Strategic Laboratory et al https://www.gisaid.org ? 2020-02-28 Brazil/SPBR-02/2020 ncov EPI_ISL_413016 MT126808 2020-02-28 South America Brazil Sao Paulo Lombardy Sao Paulo genome 29903 Human ? Male Hospital Israelita Albert Einstein Instituto Adolfo Lutz, Interdisciplinary Procedures Center, Strategic Laboratory et al https://www.gisaid.org ? 2020-03-02 Brazil/SPBR-03/2020 ncov EPI_ISL_414014 ? 2020-03-02 South America Brazil Sao Paulo Sao Paulo genome 29850 Human ? Male Hospital Israelita Albert Einstein Instituto Adolfo Lutz, Interdiciplinary Procedures Center, Strategic Laboratory et al https://www.gisaid.org ? 2020-03-10 @@ -199,17 +204,17 @@ England/20102068506/2020 ncov EPI_ISL_415149 ? 2020-03-01 Europe United Kingdom England/201040081/2020 ncov EPI_ISL_414525 ? 2020-03-02 Europe United Kingdom England England genome 29903 Human ? Male Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England et al https://www.gisaid.org ? 2020-03-13 England/201040141/2020 ncov EPI_ISL_414526 ? 2020-03-03 Europe United Kingdom England England genome 29903 Human ? Female Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England et al https://www.gisaid.org ? 2020-03-13 England/20110003506/2020 ncov EPI_ISL_415150 ? 2020-03-09 Europe United Kingdom England England genome 29903 Human ? Male Respiratory Virus Unit, Microbiology Services Colindale, Public Health England Respiratory Virus Unit, Microbiology Services Colindale, Public Health England et al https://www.gisaid.org ? 2020-03-16 -England/SHEF-BFCB1/2020 ncov EPI_ISL_416730 ? 2020-03-03 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFCC0/2020 ncov EPI_ISL_416731 ? 2020-03-03 Europe England Northamtonshire Northamtonshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFCDF/2020 ncov EPI_ISL_416732 ? 2020-03-03 Europe England London London genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFCEE/2020 ncov EPI_ISL_416733 ? 2020-03-07 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFCFD/2020 ncov EPI_ISL_416734 ? 2020-03-09 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD09/2020 ncov EPI_ISL_416735 ? 2020-03-09 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD18/2020 ncov EPI_ISL_416736 ? 2020-03-09 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD27/2020 ncov EPI_ISL_416737 ? 2020-03-03 Europe England London London genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD36/2020 ncov EPI_ISL_416738 ? 2020-03-09 Europe England Nottinghamshire Nottinghamshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD45/2020 ncov EPI_ISL_416739 ? 2020-03-09 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 -England/SHEF-BFD54/2020 ncov EPI_ISL_416740 ? 2020-03-03 Europe England South Yorkshire South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFCB1/2020 ncov EPI_ISL_416730 ? 2020-03-03 Europe United Kingdom England South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFCC0/2020 ncov EPI_ISL_416731 ? 2020-03-03 Europe United Kingdom England Northamtonshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFCDF/2020 ncov EPI_ISL_416732 ? 2020-03-03 Europe United Kingdom England London genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFCEE/2020 ncov EPI_ISL_416733 ? 2020-03-07 Europe United Kingdom England South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFCFD/2020 ncov EPI_ISL_416734 ? 2020-03-09 Europe United Kingdom England South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD09/2020 ncov EPI_ISL_416735 ? 2020-03-09 Europe United Kingdom England South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD18/2020 ncov EPI_ISL_416736 ? 2020-03-09 Europe United Kingdom England South Yorkshire genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD27/2020 ncov EPI_ISL_416737 ? 2020-03-03 Europe United Kingdom England London genome 29903 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD36/2020 ncov EPI_ISL_416738 ? 2020-03-09 Europe United Kingdom England Nottinghamshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD45/2020 ncov EPI_ISL_416739 ? 2020-03-09 Europe United Kingdom England South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 +England/SHEF-BFD54/2020 ncov EPI_ISL_416740 ? 2020-03-03 Europe United Kingdom England South Yorkshire genome 29903 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-23 England/Sheff01/2020 ncov EPI_ISL_414500 ? 2020-03-04 Europe United Kingdom England England Yorkshire genome 29782 Human ? Female Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-12 England/Sheff02/2020 ncov EPI_ISL_414501 ? 2020-03-03 Europe United Kingdom England England Yorkshire genome 29782 Human ? Male Virology Department, Sheffield Teaching Hospitals NHS Foundation Trust Department of Infection, Immunity and Cardiovascular Disease, The Florey Institute, The Medical School, University of Sheffield et al https://www.gisaid.org ? 2020-03-12 Finland/1/2020 ncov EPI_ISL_407079 MT020781 2020-01-29 Europe Finland Finland Hubei Rovaniemi genome 29859 Human ? Female Lapland Central Hospital Department of Virology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland et al https://www.gisaid.org ? 2020-02-03 @@ -404,11 +409,18 @@ Hangzhou/ZJU-08/2020 ncov EPI_ISL_416473 ? 2020-01-26 Asia China Hangzhou Hangzh Hangzhou/ZJU-09/2020 ncov EPI_ISL_416474 ? 2020-01-28 Asia China Hangzhou Hangzhou genome 29968 Human ? Male State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China 310003 State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, National Clinical Research Center for Infectious Diseases, First Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China 310003 et al https://www.gisaid.org ? 2020-03-22 Hefei/2/2020 ncov EPI_ISL_412026 ? 2020-02-23 Asia China Anhui Anhui Hefei genome 29870 Human ? ? Second Hospital of Anhui Medical University Second Hospital of Anhui Medical University et al https://www.gisaid.org ? 2020-02-24 Henan/IVDC-HeN-002/2020 ncov EPI_ISL_408487 ? 2020-01-20 Asia China Henan Henan Zhengzhou genome 29892 Human ? Female National Institute for Viral Disease Control and Prevention, China CDC National Institute for Viral Disease Control & Prevention, China CDC et al https://www.gisaid.org ? 2020-02-09 -HongKong/CUHK1/2020 ncov EPI_ISL_416314 ? 2020-02-07 Asia China Hong Kong Hong Kong genome 29903 Human ? Female Department of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China Department of Microbiology, Faculty of Medicine, Chinese University of Hong Kong, Hong Kong SAR, China et al https://www.gisaid.org ? 2020-03-20 -HongKong/CUHK2/2020 ncov EPI_ISL_416315 ? 2020-02-19 Asia China Hong Kong Hong Kong genome 29903 Human ? Male Department of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China Department of Microbiology, Faculty of Medicine, Chinese University of Hong Kong, Hong Kong SAR, China et al https://www.gisaid.org ? 2020-03-20 +HongKong/CUHK1/2020 ncov EPI_ISL_416314 ? 2020-02-07 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Female Department of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China Department of Microbiology, Faculty of Medicine, Chinese University of Hong Kong, Hong Kong SAR, China et al https://www.gisaid.org ? 2020-03-20 +HongKong/CUHK2/2020 ncov EPI_ISL_416315 ? 2020-02-19 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Male Department of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China Department of Microbiology, Faculty of Medicine, Chinese University of Hong Kong, Hong Kong SAR, China et al https://www.gisaid.org ? 2020-03-20 +HongKong/Case28_30012020/2020 ncov EPI_ISL_417185 ? 2020-02-09 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Male Department of Pathology, United Christian Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +HongKong/Case29_01022020/2020 ncov EPI_ISL_417187 ? 2020-02-08 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Female Department of Clinical Pathology, Pamela Youde Nethersole Eastern Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +HongKong/Case30_29012020/2020 ncov EPI_ISL_417188 ? 2020-02-08 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Male Department of Clinical Pathology, Pamela Youde Nethersole Eastern Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +HongKong/Case32_04022020/2020 ncov EPI_ISL_417193 ? 2020-02-09 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Male Department of Clinical Pathology, Pamela Youde Nethersole Eastern Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +HongKong/Case34_30012020/2020 ncov EPI_ISL_417197 ? 2020-02-09 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Female Department of Clinical Pathology, Pamela Youde Nethersole Eastern Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +HongKong/Case35_04022020/2020 ncov EPI_ISL_417199 ? 2020-02-09 Asia Hong Kong Hong Kong Hong Kong genome 29903 Human ? Female Department of Clinical Pathology, Pamela Youde Nethersole Eastern Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 HongKong/VB20024950/2020 ncov EPI_ISL_412029 ? 2020-01-30 Asia Hong Kong Hong Kong Hong Kong genome 29793 Human ? Male Hong Kong Department of Health The University of Hong Kong et al https://www.gisaid.org ? 2020-02-24 HongKong/VB20026565/2020 ncov EPI_ISL_412030 ? 2020-02-01 Asia Hong Kong Hong Kong Hong Kong genome 29843 Human ? Male Hong Kong Department of Health School of Public Health, The University of Hon g Kong et al https://www.gisaid.org ? 2020-02-24 HongKong/VM20001061/2020 ncov EPI_ISL_412028 ? 2020-01-22 Asia Hong Kong Hong Kong Hong Kong genome 29851 Human ? Male Hong Kong Department of Health School of Public Health, The University of Hon g Kong et al https://www.gisaid.org ? 2020-02-24 +HongKong/case2_VB20017970/2020 ncov EPI_ISL_417064 ? 2020-01-21 Asia Hong Kong Hong Kong Hong Kong genome 29834 Human ? Male Prince of Wales Hospital Hong Kong Department of Health et al https://www.gisaid.org ? 2020-03-24 HongKong/case42_VM20002493/2020 ncov EPI_ISL_414527 ? 2020-02-09 Asia Hong Kong Hong Kong Hong Kong Hong Kong genome 29764 Human ? Female Hong Kong Department of Health School of Public Health, The University of Hong Kong et al https://www.gisaid.org ? 2020-03-13 HongKong/case48_VM20002507/2020 ncov EPI_ISL_414528 ? 2020-02-10 Asia Hong Kong Hong Kong Hong Kong Hong Kong genome 29764 Human ? Female Hong Kong Department of Health School of Public Health, The University of Hong Kong et al https://www.gisaid.org ? 2020-03-13 HongKong/case49_VM20002508/2020 ncov EPI_ISL_414567 ? 2020-02-10 Asia Hong Kong Hong Kong Hong Kong Hong Kong genome 29764 Human ? Male Hong Kong Department of Health School of Public Health, The University of Hong Kong et al https://www.gisaid.org ? 2020-03-13 @@ -729,6 +741,7 @@ Nonthaburi/61/2020 ncov EPI_ISL_403962 ? 2020-01-08 Asia Thailand Nonthaburi Hub Nonthaburi/74/2020 ncov EPI_ISL_403963 ? 2020-01-13 Asia Thailand Nonthaburi Hubei Bangkok genome 29859 Human ? Female Bamrasnaradura Hospital 1. Department of Medical Sciences, Ministry of Public Health, Thailand 2. Thai Red Cross Emerging Infectious Diseases - Health Science Centre 3. Department of Disease Control, Ministry of Public Health, Thailand et al https://www.gisaid.org ? 2020-01-17 NorthernIreland/HSCNI01/2020 ncov EPI_ISL_414949 ? 2020-02-26 Europe United Kingdom Northern Ireland Northern Ireland genome 29782 Human ? Female Regional Virus Laboratory, Belfast Public Health Wales Microbiology Cardiff et al https://www.gisaid.org ? 2020-03-16 Panama/328677/2020 ncov EPI_ISL_415152 ? 2020-03-06 Central America Panama Panama City Comunitat Valenciana genome 29865 Human ? Female Gorgas Memorial Institute for Health Studies Gorgas Memorial Institute for Health Studies et al https://www.gisaid.org ? 2020-03-16 +Peru/01/2020 ncov EPI_ISL_416025 ? 2020-03-05 South America Peru Lima Lima genome 19131 Human ? Male Laboratorio de Referencia Nacional de Virus Respiratorios. Instituto Nacional de Salud Peru Laboratorio de Referencia Nacional de Biotecnologia y Biologia Molecular. Instituto Nacional de Salud Peru et al https://www.gisaid.org ? 2020-03-19 Peru/010/2020 ncov EPI_ISL_415787 ? 2020-03-10 South America Peru Lima Lima genome 29856 Human ? Female Laboratorio de Referencia Nacional de Virus Respiratorio. Instituto Nacional de Salud. Peru Laboratorio de Referencia Nacional de Biotecnologia y Biologia Molecular.Instituto Nacional de Salud.Peru et al https://www.gisaid.org ? 2020-03-19 Poland/PL_P1/2020 ncov EPI_ISL_416488 ? 2020-03-03 Europe Poland Zielonogorskie Zielonogorskie genome 29903 Human ? Male ViroGenetics - BSL3 Laboratory of Virology; Human Genome Variation Research Group & Genomics Centre MCB; Bioinformatics Research Group Department of Virology ViroGenetics - BSL3 Laboratory of Virology; Human Genome Variation Research Group & Genomics Centre MCB; Bioinformatics Research Group Department of Virology et al https://www.gisaid.org ? 2020-03-22 Portugal/CV62/2020 ncov EPI_ISL_413647 ? 2020-03-01 Europe Portugal Portugal Portugal genome 29903 Human ? Male Centro Hospital do Porto, E.P.E. - H. Geral de Santo Antonio Instituto Nacional de Saude (INSA) et al https://www.gisaid.org ? 2020-03-09 @@ -919,7 +932,7 @@ Switzerland/BE6651/2020 ncov EPI_ISL_415456 ? 2020-02-29 Europe Switzerland Bern Switzerland/BL0902/2020 ncov EPI_ISL_414021 ? 2020-02-27 Europe Switzerland Basel Basel genome 29890 Human ? Male Laboratoire de Virologie, HUG Swiss National Reference Centre for Influenza et al https://www.gisaid.org ? 2020-03-10 Switzerland/BS0914/2020 ncov EPI_ISL_415701 ? 2020-03-02 Europe Switzerland Basel Basel genome 29899 Human ? unknwon Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-19 Switzerland/GE0199/2020 ncov EPI_ISL_415455 ? 2020-02-28 Europe Switzerland Geneva Geneva genome 29892 Human ? ? Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-17 -Switzerland/GE062072020 ncov EPI_ISL_415706 ? 2020-03-06 Europe Switzerland Geneva Geneva genome 29903 Human ? unknwon Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-19 +Switzerland/GE06207/2020 ncov EPI_ISL_415706 ? 2020-03-06 Europe Switzerland genome 29903 Human ? unknwon Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-19 Switzerland/GE1402/2020 ncov EPI_ISL_415700 ? 2020-02-28 Europe Switzerland Geneva Geneva genome 29853 Human ? ? Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-19 Switzerland/GE1422/2020 ncov EPI_ISL_415454 ? 2020-02-28 Europe Switzerland Geneva Geneva genome 29896 Human ? ? Hopitaux universitaires de Geneve Laboratoire de Virologie Hopitaux universitaires de Geneve Laboratoire de Virologie et al https://www.gisaid.org ? 2020-03-17 Switzerland/GE3121/2020 ncov EPI_ISL_414019 ? 2020-02-27 Europe Switzerland Geneva Geneva genome 29871 Human ? Male Laboratoire de Virologie, HUG Swiss National Reference Centre for Influenza et al https://www.gisaid.org ? 2020-03-10 @@ -1010,9 +1023,9 @@ USA/MN1-MDH1/2020 ncov EPI_ISL_414588 MT188341 2020-03-05 North America USA Minn USA/MN2-MDH2/2020 ncov EPI_ISL_414589 MT188340 2020-03-07 North America USA Minnesota Minnesota genome 29845 Human ? ? Minnesota Department of Health, Public Health Laboratory Minnesota Department of Health, Public Health Laboratory et al https://www.gisaid.org ? 2020-03-13 USA/MN3-MDH3/2020 ncov EPI_ISL_414590 MT188339 2020-03-09 North America USA Minnesota Grand Princess genome 29783 Human ? ? Minnesota Department of Health, Public Health Laboratory Minnesota Department of Health, Public Health Laboratory et al https://www.gisaid.org ? 2020-03-13 USA/NY-NYUMC1/2020 ncov EPI_ISL_414639 ? 2020-03-04 North America USA New York New York Nassau County genome 29903 Human ? Male NYU Langone Health Departments of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-15 -USA/NY-NYUMC2/2020 ncov EPI_ISL_416830 ? 2020-03-16 North America USA New York City New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 -USA/NY-NYUMC3/2020 ncov EPI_ISL_416831 ? 2020-03-16 North America USA New York City New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 -USA/NY-NYUMC4/2020 ncov EPI_ISL_416832 ? 2020-03-16 North America USA New York City New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 +USA/NY-NYUMC2/2020 ncov EPI_ISL_416830 ? 2020-03-16 North America USA New York New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 +USA/NY-NYUMC3/2020 ncov EPI_ISL_416831 ? 2020-03-16 North America USA New York New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 +USA/NY-NYUMC4/2020 ncov EPI_ISL_416832 ? 2020-03-16 North America USA New York New York City genome 29903 Human ? ? NYU Langone Health Department of Pathology and Medicine, New York University School of Medicine et al https://www.gisaid.org ? 2020-03-23 USA/NY1-PV08001/2020 ncov EPI_ISL_414476 ? 2020-02-29 North America USA New York Iran genome 29903 Human ? Female MSHS Clinical Microbiology Laboratories MSHS Pathogen Surveillance Program et al https://www.gisaid.org ? 2020-03-12 USA/NY2-PV08100/2020 ncov EPI_ISL_415151 ? 2020-03-04 North America USA New York New York genome 29760 Human ? Male MSHS Clinical Microbiology Laboratories MSHS Pathogen Surveillance Program et al https://www.gisaid.org ? 2020-03-16 USA/TX1/2020 ncov EPI_ISL_411956 MT106054 2020-02-11 North America USA Texas Hubei genome 29882 Human ? Female Texas Department of State Health Services Pathogen Discovery, Respiratory Viruses Branch, Division of Viral Diseases, Centers for Disease Control and Prevention et al https://www.gisaid.org ? 2020-02-22 @@ -1026,15 +1039,126 @@ USA/UT-00008/2020 ncov EPI_ISL_417026 ? 2020-03-20 North America USA Utah Utah USA/UT-00009/2020 ncov EPI_ISL_417027 ? 2020-03-20 North America USA Utah Utah genome 29865 Human ? ? Utah Public Health Laboratory Utah Public Health Laboratory et al https://www.gisaid.org ? 2020-03-23 USA/UT-00020/2020 ncov EPI_ISL_417028 ? 2020-03-20 North America USA Utah Utah genome 29903 Human ? ? Utah Public Health Laboratory Utah Public Health Laboratory et al https://www.gisaid.org ? 2020-03-23 USA/WA-S10/2020 ncov EPI_ISL_416465 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S100/2020 ncov EPI_ISL_417153 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S101/2020 ncov EPI_ISL_417154 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S102/2020 ncov EPI_ISL_417155 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S103/2020 ncov EPI_ISL_417156 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S104/2020 ncov EPI_ISL_417157 ? 2020-03-05 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S105/2020 ncov EPI_ISL_417158 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S106/2020 ncov EPI_ISL_417159 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S107/2020 ncov EPI_ISL_417160 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S108/2020 ncov EPI_ISL_417161 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S109/2020 ncov EPI_ISL_417162 ? 2020-03-01 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S11/2020 ncov EPI_ISL_416466 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S110/2020 ncov EPI_ISL_417163 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S111/2020 ncov EPI_ISL_417164 ? 2020-03-07 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S112/2020 ncov EPI_ISL_417165 ? 2020-03-08 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S113/2020 ncov EPI_ISL_417166 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S114/2020 ncov EPI_ISL_417167 ? 2020-03-05 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S115/2020 ncov EPI_ISL_417168 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S116/2020 ncov EPI_ISL_417169 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S117/2020 ncov EPI_ISL_417170 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S118/2020 ncov EPI_ISL_417171 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S119/2020 ncov EPI_ISL_417172 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S12/2020 ncov EPI_ISL_417065 ? 2020-03-03 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S120/2020 ncov EPI_ISL_417173 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S121/2020 ncov EPI_ISL_417174 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S122/2020 ncov EPI_ISL_417175 ? 2020-03-02 North America USA Washington Washington Grant County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S13/2020 ncov EPI_ISL_417066 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S14/2020 ncov EPI_ISL_417067 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S15/2020 ncov EPI_ISL_417068 ? 2020-03-02 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S16/2020 ncov EPI_ISL_417069 ? 2020-03-03 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S17/2020 ncov EPI_ISL_417070 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S18/2020 ncov EPI_ISL_417071 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S19/2020 ncov EPI_ISL_417072 ? 2020-03-02 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S2/2020 ncov EPI_ISL_413456 ? 2020-02-20 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-05 +USA/WA-S20/2020 ncov EPI_ISL_417073 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S21/2020 ncov EPI_ISL_417074 ? 2020-03-02 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S22/2020 ncov EPI_ISL_417075 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S23/2020 ncov EPI_ISL_417076 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S24/2020 ncov EPI_ISL_417077 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S25/2020 ncov EPI_ISL_417078 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S26/2020 ncov EPI_ISL_417079 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S27/2020 ncov EPI_ISL_417080 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S28/2020 ncov EPI_ISL_417081 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S29/2020 ncov EPI_ISL_417082 ? 2020-03-02 North America USA Washington Washington Grant County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S3/2020 ncov EPI_ISL_413560 ? 2020-02-28 North America USA Washington Washington genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-07 +USA/WA-S30/2020 ncov EPI_ISL_417083 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S31/2020 ncov EPI_ISL_417084 ? 2020-03-02 North America USA Washington Washington Grant County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S32/2020 ncov EPI_ISL_417085 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S33/2020 ncov EPI_ISL_417086 ? 2020-03-01 North America USA Washington Washington Clark County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S34/2020 ncov EPI_ISL_417087 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S35/2020 ncov EPI_ISL_417088 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S36/2020 ncov EPI_ISL_417089 ? 2020-03-02 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S37/2020 ncov EPI_ISL_417090 ? 2020-03-04 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S38/2020 ncov EPI_ISL_417091 ? 2020-03-04 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S39/2020 ncov EPI_ISL_417092 ? 2020-03-04 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S4/2020 ncov EPI_ISL_416459 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S40/2020 ncov EPI_ISL_417093 ? 2020-02-28 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S41/2020 ncov EPI_ISL_417094 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S42/2020 ncov EPI_ISL_417095 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S43/2020 ncov EPI_ISL_417096 ? 2020-02-27 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S44/2020 ncov EPI_ISL_417097 ? 2020-02-28 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S45/2020 ncov EPI_ISL_417098 ? 2020-02-29 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S46/2020 ncov EPI_ISL_417099 ? 2020-02-29 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S47/2020 ncov EPI_ISL_417100 ? 2020-02-29 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S48/2020 ncov EPI_ISL_417101 ? 2020-02-29 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S49/2020 ncov EPI_ISL_417102 ? 2020-03-04 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S5/2020 ncov EPI_ISL_416460 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S50/2020 ncov EPI_ISL_417103 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S51/2020 ncov EPI_ISL_417104 ? 2020-03-03 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S52/2020 ncov EPI_ISL_417105 ? 2020-03-03 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S53/2020 ncov EPI_ISL_417106 ? 2020-03-03 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S54/2020 ncov EPI_ISL_417107 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S55/2020 ncov EPI_ISL_417108 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S56/2020 ncov EPI_ISL_417109 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S57/2020 ncov EPI_ISL_417110 ? 2020-03-03 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S58/2020 ncov EPI_ISL_417111 ? 2020-03-05 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S59/2020 ncov EPI_ISL_417112 ? 2020-03-02 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S6/2020 ncov EPI_ISL_416461 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S60/2020 ncov EPI_ISL_417113 ? 2020-03-02 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S61/2020 ncov EPI_ISL_417114 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S62/2020 ncov EPI_ISL_417115 ? 2020-03-03 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S63/2020 ncov EPI_ISL_417116 ? 2020-03-04 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S64/2020 ncov EPI_ISL_417117 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S65/2020 ncov EPI_ISL_417118 ? 2020-03-03 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S66/2020 ncov EPI_ISL_417119 ? 2020-03-06 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S67/2020 ncov EPI_ISL_417120 ? 2020-03-04 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S68/2020 ncov EPI_ISL_417121 ? 2020-03-04 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S69/2020 ncov EPI_ISL_417122 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S7/2020 ncov EPI_ISL_416462 ? 2020-02-24 North America USA Washington Washington genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S70/2020 ncov EPI_ISL_417123 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S71/2020 ncov EPI_ISL_417124 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S72/2020 ncov EPI_ISL_417125 ? 2020-03-06 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S73/2020 ncov EPI_ISL_417126 ? 2020-03-05 North America USA Washington Washington genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S74/2020 ncov EPI_ISL_417127 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S75/2020 ncov EPI_ISL_417128 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S76/2020 ncov EPI_ISL_417129 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S77/2020 ncov EPI_ISL_417130 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S78/2020 ncov EPI_ISL_417131 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S79/2020 ncov EPI_ISL_417132 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S8/2020 ncov EPI_ISL_416463 ? 2020-02-24 North America USA Washington Washington King County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S80/2020 ncov EPI_ISL_417133 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S81/2020 ncov EPI_ISL_417134 ? 2020-02-26 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S82/2020 ncov EPI_ISL_417135 ? 2020-02-22 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S83/2020 ncov EPI_ISL_417136 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S84/2020 ncov EPI_ISL_417137 ? 2020-02-21 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S85/2020 ncov EPI_ISL_417138 ? 2020-03-05 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S86/2020 ncov EPI_ISL_417139 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S87/2020 ncov EPI_ISL_417140 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S88/2020 ncov EPI_ISL_417141 ? 2020-03-01 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S89/2020 ncov EPI_ISL_417142 ? 2020-02-29 North America USA Washington Washington Umatilla County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-S9/2020 ncov EPI_ISL_416464 ? 2020-03-01 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Seattle Flu Study Seattle Flu Study et al https://www.gisaid.org ? 2020-03-22 +USA/WA-S90/2020 ncov EPI_ISL_417143 ? 2020-02-29 North America USA Washington Washington Umatilla County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S91/2020 ncov EPI_ISL_417144 ? 2020-03-02 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S92/2020 ncov EPI_ISL_417145 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S93/2020 ncov EPI_ISL_417146 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S94/2020 ncov EPI_ISL_417147 ? 2020-02-28 North America USA Washington Washington Snohomish County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S95/2020 ncov EPI_ISL_417148 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S96/2020 ncov EPI_ISL_417149 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S97/2020 ncov EPI_ISL_417150 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S98/2020 ncov EPI_ISL_417151 ? 2020-02-29 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 +USA/WA-S99/2020 ncov EPI_ISL_417152 ? 2020-02-28 North America USA Washington Washington King County genome 29903 Human ? ? Washington State Department of Health Seattle Flu Study et al https://www.gisaid.org ? 2020-03-24 USA/WA-UW100/2020 ncov EPI_ISL_416638 ? 2020-03-12 North America USA Washington Washington genome 29880 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW101/2020 ncov EPI_ISL_416639 ? 2020-03-10 North America USA Washington Washington genome 29817 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW102/2020 ncov EPI_ISL_416640 ? 2020-03-11 North America USA Washington Washington genome 29705 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 @@ -1047,8 +1171,8 @@ USA/WA-UW108/2020 ncov EPI_ISL_416646 ? 2020-03-11 North America USA Washington USA/WA-UW109/2020 ncov EPI_ISL_416647 ? 2020-03-11 North America USA Washington Washington genome 29730 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW110/2020 ncov EPI_ISL_416648 ? 2020-03-11 North America USA Washington Washington genome 29869 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW111/2020 ncov EPI_ISL_416649 ? 2020-03-11 North America USA Washington Washington genome 29828 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW112/2020 ncov EPI_ISL_416650 ? 2020-03-10 North America USA genome 29867 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW113/2020 ncov EPI_ISL_416651 ? 2020-03-11 North America USA genome 29893 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW112/2020 ncov EPI_ISL_416650 ? 2020-03-10 North America USA Washington Washington genome 29867 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW113/2020 ncov EPI_ISL_416651 ? 2020-03-11 North America USA Washington Washington genome 29893 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW114/2020 ncov EPI_ISL_416652 ? 2020-03-11 North America USA Washington Washington genome 29829 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW115/2020 ncov EPI_ISL_416653 ? 2020-03-11 North America USA Washington Washington genome 29895 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW116/2020 ncov EPI_ISL_416654 ? 2020-03-11 North America USA Washington Washington genome 29898 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 @@ -1057,7 +1181,7 @@ USA/WA-UW118/2020 ncov EPI_ISL_416656 ? 2020-03-11 North America USA Washington USA/WA-UW119/2020 ncov EPI_ISL_416657 ? 2020-03-11 North America USA Washington Washington genome 29903 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW120/2020 ncov EPI_ISL_416658 ? 2020-03-11 North America USA Washington Washington genome 29910 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW121/2020 ncov EPI_ISL_416659 ? 2020-03-11 North America USA Washington Washington genome 29839 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW122/2020 ncov EPI_ISL_416660 ? 2020-03-10 North America USA genome 29823 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW122/2020 ncov EPI_ISL_416660 ? 2020-03-10 North America USA Washington Washington genome 29823 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW123/2020 ncov EPI_ISL_416661 ? 2020-03-12 North America USA Washington Washington genome 29874 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW124/2020 ncov EPI_ISL_416662 ? 2020-03-12 North America USA Washington Washington genome 29862 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW125/2020 ncov EPI_ISL_416663 ? 2020-03-12 North America USA Washington Washington genome 29841 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 @@ -1069,17 +1193,17 @@ USA/WA-UW130/2020 ncov EPI_ISL_416668 ? 2020-03-11 North America USA Washington USA/WA-UW131/2020 ncov EPI_ISL_416669 ? 2020-03-11 North America USA Washington Washington genome 29828 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW132/2020 ncov EPI_ISL_416670 ? 2020-03-12 North America USA Washington Washington genome 29828 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW133/2020 ncov EPI_ISL_416671 ? 2020-03-12 North America USA Washington Washington genome 29766 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW134/2020 ncov EPI_ISL_416672 ? 2020-03-10 North America USA genome 29963 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW134/2020 ncov EPI_ISL_416672 ? 2020-03-10 North America USA Washington Washington genome 29963 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW135/2020 ncov EPI_ISL_416673 ? 2020-03-11 North America USA Washington Washington genome 29776 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW136/2020 ncov EPI_ISL_416674 ? 2020-03-11 North America USA genome 29835 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW137/2020 ncov EPI_ISL_416675 ? 2020-03-11 North America USA genome 29884 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW138/2020 ncov EPI_ISL_416676 ? 2020-03-11 North America USA genome 29811 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW136/2020 ncov EPI_ISL_416674 ? 2020-03-11 North America USA Washington Washington genome 29835 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW137/2020 ncov EPI_ISL_416675 ? 2020-03-11 North America USA Washington Washington genome 29884 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW138/2020 ncov EPI_ISL_416676 ? 2020-03-11 North America USA Washington Washington genome 29811 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW139/2020 ncov EPI_ISL_416677 ? 2020-03-12 North America USA Washington Washington genome 29878 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW140/2020 ncov EPI_ISL_416678 ? 2020-03-11 North America USA Washington Washington genome 29790 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW141/2020 ncov EPI_ISL_416679 ? 2020-03-11 North America USA Washington Washington genome 29869 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW142/2020 ncov EPI_ISL_416680 ? 2020-03-11 North America USA Washington Washington genome 29821 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW143/2020 ncov EPI_ISL_416681 ? 2020-03-11 North America USA Washington Washington genome 29876 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 -USA/WA-UW144/2020 ncov EPI_ISL_416682 ? 2020-03-09 North America USA genome 29799 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 +USA/WA-UW144/2020 ncov EPI_ISL_416682 ? 2020-03-09 North America USA Washington Washington genome 29799 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW145/2020 ncov EPI_ISL_416683 ? 2020-03-15 North America USA Washington Washington genome 29832 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW146/2020 ncov EPI_ISL_416684 ? 2020-03-14 North America USA Washington Washington genome 29788 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 USA/WA-UW147/2020 ncov EPI_ISL_416685 ? 2020-03-15 North America USA Washington Washington genome 29841 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-23 @@ -1184,7 +1308,7 @@ USA/WA-UW68/2020 ncov EPI_ISL_415596 ? 2020-03-09 North America USA Washington W USA/WA-UW69/2020 ncov EPI_ISL_415597 ? 2020-03-10 North America USA Washington Washington Seattle genome 29886 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 USA/WA-UW70/2020 ncov EPI_ISL_415598 ? 2020-03-10 North America USA Washington Washington genome 29852 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 USA/WA-UW71/2020 ncov EPI_ISL_415599 ? 2020-03-09 North America USA Washington Washington genome 29877 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 -USA/WA-UW72/2020 ncov EPI_ISL_415600 ? 2020-03-09 North America USA genome 29842 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 +USA/WA-UW72/2020 ncov EPI_ISL_415600 ? 2020-03-09 North America USA Washington Washington genome 29842 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 USA/WA-UW73/2020 ncov EPI_ISL_415601 ? 2020-03-10 North America USA Washington Washington genome 29852 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 USA/WA-UW74/2020 ncov EPI_ISL_415602 ? 2020-03-10 North America USA Washington Washington Seattle genome 29871 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 USA/WA-UW75/2020 ncov EPI_ISL_415603 ? 2020-03-10 North America USA Washington Washington Seattle genome 29904 Human ? ? UW Virology Lab UW Virology Lab et al https://www.gisaid.org ? 2020-03-18 @@ -1302,6 +1426,8 @@ Zhejiang/WZ-01/2020 ncov EPI_ISL_404227 ? 2020-01-16 Asia China Zhejiang Zhejian Zhejiang/WZ-02/2020 ncov EPI_ISL_404228 ? 2020-01-17 Asia China Zhejiang Zhejiang Hangzhou genome 29859 Human ? Male Zhejiang Provincial Center for Disease Control and Prevention Department of Microbiology, Zhejiang Provincial Center for Disease Control and Prevention et al https://www.gisaid.org ? 2020-01-21 bat/Yunnan/RaTG13/2013 ncov EPI_ISL_402131 ? 2013-07-24 Asia China Yunnan Yunnan Pu'er genome 29855 Rhinolophus affinis ? Male Wuhan Institute of Virology, Chinese Academy of Sciences Wuhan Institute of Virology, Chinese Academy of Sciences et al https://www.gisaid.org ? 2020-01-24 canine/HongKong/20-02756/2020 ncov EPI_ISL_414518 ? 2020-02-26 Asia Hong Kong Hong Kong Hong Kong genome 27871 Canine ? Male Tai Lung Veterinary Laboratory, Agriculture, Fisheries and Conservation Department School of Public Health, The University of Hong Kong et al https://www.gisaid.org ? 2020-03-13 +hCoV/HongKong/Case19_04022020/2020 ncov EPI_ISL_417181 ? 2020-02-05 Asia Hong Kong genome 29903 Human ? Female Department of Pathology, United Christian Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 +hCoV/HongKong/Case20_30012020/2020 ncov EPI_ISL_417182 ? 2020-02-05 Asia Hong Kong genome 29903 Human ? Female Department of Pathology, United Christian Hospital Department of Health Technology and Informatics, Faculty of Health and Social Science, The Hong Kong Polytechnic University et al https://www.gisaid.org ? 2020-03-24 pangolin/China/MP789/2019 ncov EPI_ISL_412860 ? 2019-03-19 Asia China genome 27213 Manis javanica ? ? unknown SCSFRI, South China Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences (SCSFRI, CAFS) et al https://www.gisaid.org ? 2020-02-27 pangolin/Guangdong/1/2019 ncov EPI_ISL_410721 ? 2019 Asia China Guangdong Guangdong genome 29825 Manis javanica ? ? South China Agricultural University South China Agricultural University et al https://www.gisaid.org ? 2020-02-18 pangolin/Guangdong/P2S/2019 ncov EPI_ISL_410544 ? 2019 Asia China Guangdong Guangdong genome 29769 Manis javanica ? Unknown Beijing Institute of Microbiology and Epidemiology Beijing Institute of Microbiology and Epidemiology et al https://www.gisaid.org ? 2020-02-17