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Bugfixes

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barneypotter24 committed Nov 29, 2017
1 parent dd01d8b commit 9491e590d54785e697d479e9c7d0af2d76c0d7a9
Showing with 2 additions and 1 deletion.
  1. +1 −1 src/cfg.py
  2. +1 −0 src/run.py
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@@ -2,7 +2,7 @@
from old_cleaning_functions import *
### Acceptable parameters ###
viruses = [ 'seasonal_flu', 'piglets' ]
pathogens = [ 'seasonal_flu', 'piglets' ]
subtypes = { 'seasonal_flu': [ 'h3n2', 'h1n1pdm', 'vic', 'yam' ] }
datatypes = [ 'titer', 'sequence', 'pathogen' ]
filetypes = [ 'fasta' ]
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@@ -3,6 +3,7 @@
from genbank_parsers import extract_attributions
import cfg as cfg
import argparse
import logging
import os, sys, time
sys.path.append('')

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