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strain virus accession date region country division city db segment authors url title journal paper_url
1_0087_PF zika KX447509 2013-12-XX oceania french_polynesia french_polynesia french_polynesia genbank genome Pettersson et al https://www.ncbi.nlm.nih.gov/nuccore/KX447509 How Did Zika Virus Emerge in the Pacific Islands and Latin America? MBio 7 (5), e01239-16 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27729507
1_0181_PF zika KX447512 2013-12-XX oceania french_polynesia french_polynesia french_polynesia genbank genome Pettersson et al https://www.ncbi.nlm.nih.gov/nuccore/KX447512 How Did Zika Virus Emerge in the Pacific Islands and Latin America? MBio 7 (5), e01239-16 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27729507
1_0199_PF zika KX447519 2013-11-XX oceania french_polynesia french_polynesia french_polynesia genbank genome Pettersson et al https://www.ncbi.nlm.nih.gov/nuccore/KX447519 How Did Zika Virus Emerge in the Pacific Islands and Latin America? MBio 7 (5), e01239-16 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27729507
Aedes_aegypti/USA/2016/FL05 zika KY075937 2016-09-09 north_america usa usa usa genbank genome Grubaugh et al https://www.ncbi.nlm.nih.gov/nuccore/KY075937 Genomic epidemiology reveals multiple introductions of Zika virus into the United States Nature (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/28538723
BRA/2016/FC_6706 zika KY785433 2016-04-08 south_america brazil brazil brazil genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785433 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
Brazil/2015/ZBRA105 zika KY558989 2015-02-23 south_america brazil brazil brazil genbank genome Faria et al https://www.ncbi.nlm.nih.gov/nuccore/KY558989 Establishment and cryptic transmission of Zika virus in Brazil and the Americas Nature 546 (7658), 406-410 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538727
Brazil/2015/ZBRC301 zika KY558995 2015-05-13 south_america brazil brazil brazil genbank genome Faria et al https://www.ncbi.nlm.nih.gov/nuccore/KY558995 Establishment and cryptic transmission of Zika virus in Brazil and the Americas Nature 546 (7658), 406-410 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538727
Brazil/2015/ZBRC303 zika KY558997 2015-05-14 south_america brazil brazil brazil genbank genome Faria et al https://www.ncbi.nlm.nih.gov/nuccore/KY558997 Establishment and cryptic transmission of Zika virus in Brazil and the Americas Nature 546 (7658), 406-410 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538727
Brazil/2016/ZBRC16 zika KY558991 2016-01-19 south_america brazil brazil brazil genbank genome Faria et al https://www.ncbi.nlm.nih.gov/nuccore/KY558991 Establishment and cryptic transmission of Zika virus in Brazil and the Americas Nature 546 (7658), 406-410 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538727
COL/FLR_00008/2015 zika MF574562 2015-12-XX south_america colombia colombia colombia genbank genome Pickett et al https://www.ncbi.nlm.nih.gov/nuccore/MF574562 Direct Submission Submitted J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/
COL/FLR_00024/2015 zika MF574569 2015-12-XX south_america colombia colombia colombia genbank genome Pickett et al https://www.ncbi.nlm.nih.gov/nuccore/MF574569 Direct Submission Submitted J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/
COL/PRV_00028/2015 zika MF574578 2016-12-XX south_america colombia colombia colombia genbank genome Pickett et al https://www.ncbi.nlm.nih.gov/nuccore/MF574578 Direct Submission Submitted J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/
Colombia/2016/ZC204Se zika KY317939 2016-01-06 south_america colombia colombia colombia genbank genome Quick et al https://www.ncbi.nlm.nih.gov/nuccore/KY317939 Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples Nat Protoc 12 (6), 1261-1276 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538739
DOM/2016/BB_0059 zika KY785425 2016-04-04 north_america dominican_republic dominican_republic dominican_republic genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785425 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
DOM/2016/BB_0183 zika KY785420 2016-04-18 north_america dominican_republic dominican_republic dominican_republic genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785420 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
DOM/2016/BB_0433 zika KY785441 2016-06-13 north_america dominican_republic dominican_republic dominican_republic genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785441 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
DOM/2016/MA_WGS16_011 zika KY785484 2016-06-06 north_america dominican_republic dominican_republic dominican_republic genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785484 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
EcEs062_16 zika KX879603 2016-04-XX south_america ecuador ecuador ecuador genbank genome Marquez et al https://www.ncbi.nlm.nih.gov/nuccore/KX879603 First Complete Genome Sequences of Zika Virus Isolated from Febrile Patient Sera in Ecuador Genome Announc 5 (8), e01673-16 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28232448
HND/2016/HU_ME59 zika KY785418 2016-05-13 north_america honduras honduras honduras genbank genome Metsky et al https://www.ncbi.nlm.nih.gov/nuccore/KY785418 Zika virus evolution and spread in the Americas Nature 546 (7658), 411-415 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28538734
Nica1_16 zika KX421195 2016-01-19 north_america nicaragua nicaragua nicaragua genbank genome Tabata et al https://www.ncbi.nlm.nih.gov/nuccore/KX421195 Zika Virus Targets Different Primary Human Placental Cells, Suggesting Two Routes for Vertical Transmission Cell Host Microbe 20 (2), 155-166 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27443522
PAN/CDC_259359_V1_V3/2015 zika KX156774 2015-12-18 north_america panama panama panama genbank genome Shabman et al https://www.ncbi.nlm.nih.gov/nuccore/KX156774 Direct Submission Submitted (29-APR-2016) J. Craig Venter Institute, 9704 Medical Center Drive, Rockville, MD 20850, USA https://www.ncbi.nlm.nih.gov/pubmed/
PRVABC59 zika KU501215 2015-12-XX north_america puerto_rico puerto_rico puerto_rico genbank genome Lanciotti et al https://www.ncbi.nlm.nih.gov/nuccore/KU501215 Phylogeny of Zika Virus in Western Hemisphere, 2015 Emerging Infect. Dis. 22 (5), 933-935 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27088323
SG_018 zika KY241688 2016-09-13 southeast_asia singapore singapore singapore genbank genome Ho et al https://www.ncbi.nlm.nih.gov/nuccore/KY241688 Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis Lancet Infect Dis (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/
SG_027 zika KY241697 2016-08-27 southeast_asia singapore singapore singapore genbank genome Ho et al https://www.ncbi.nlm.nih.gov/nuccore/KY241697 Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis Lancet Infect Dis (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/
SG_056 zika KY241726 2016-08-28 southeast_asia singapore singapore singapore genbank genome Ho et al https://www.ncbi.nlm.nih.gov/nuccore/KY241726 Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis Lancet Infect Dis (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/
SG_074 zika KY241744 2016-08-28 southeast_asia singapore singapore singapore genbank genome Ho et al https://www.ncbi.nlm.nih.gov/nuccore/KY241744 Outbreak of Zika virus infection in Singapore: an epidemiological, entomological, virological, and clinical analysis Lancet Infect Dis (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/
SMGC_1 zika KX266255 2016-02-14 oceania american_samoa american_samoa american_samoa genbank genome Bi et al https://www.ncbi.nlm.nih.gov/nuccore/KX266255 Genetic and Biological Characterization for Zika Viruses Imported through Shenzhen Port Chin. Sci. Bull. 61 (22), 2463-2474 (2016) https://www.ncbi.nlm.nih.gov/pubmed/
Thailand/1610acTw zika MF692778 2016-10-XX southeast_asia thailand thailand thailand genbank genome Lin et al https://www.ncbi.nlm.nih.gov/nuccore/MF692778 Imported Zika virus strains, Taiwan, 2016 Unpublished https://www.ncbi.nlm.nih.gov/pubmed/
USA/2016/FL022 zika KY075935 2016-07-22 north_america usa usa usa genbank genome Grubaugh et al https://www.ncbi.nlm.nih.gov/nuccore/KY075935 Genomic epidemiology reveals multiple introductions of Zika virus into the United States Nature (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/28538723
USA/2016/FLUR022 zika KY325473 2016-08-31 north_america usa usa usa genbank genome Grubaugh et al https://www.ncbi.nlm.nih.gov/nuccore/KY325473 Genomic epidemiology reveals multiple introductions of Zika virus into the United States Nature (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/28538723
USA/2016/FLWB042 zika KY325478 2016-09-26 north_america usa usa usa genbank genome Grubaugh et al https://www.ncbi.nlm.nih.gov/nuccore/KY325478 Genomic epidemiology reveals multiple introductions of Zika virus into the United States Nature (2017) In press https://www.ncbi.nlm.nih.gov/pubmed/28538723
V8375 zika KU501217 2015-11-01 north_america guatemala guatemala guatemala genbank genome Lanciotti et al https://www.ncbi.nlm.nih.gov/nuccore/KU501217 Phylogeny of Zika Virus in Western Hemisphere, 2015 Emerging Infect. Dis. 22 (5), 933-935 (2016) https://www.ncbi.nlm.nih.gov/pubmed/27088323
VEN/UF_1/2016 zika KX702400 2016-03-25 south_america venezuela venezuela venezuela genbank genome Blohm et al https://www.ncbi.nlm.nih.gov/nuccore/KX702400 Complete Genome Sequences of Identical Zika virus Isolates in a Nursing Mother and Her Infant Genome Announc 5 (17), e00231-17 (2017) https://www.ncbi.nlm.nih.gov/pubmed/28450510
ZKC2/2016 zika KX253996 2016-02-16 oceania american_samoa american_samoa american_samoa genbank genome Wu et al https://www.ncbi.nlm.nih.gov/nuccore/KX253996 Direct Submission Submitted (18-MAY-2016) Center for Diseases Control and Prevention of Guangdong Province; National Institute of Viral Disease Control and Prevention, China https://www.ncbi.nlm.nih.gov/pubmed/
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