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RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
Assembly and intrahost / low-frequency variant calling for viral samples
Python package with helper tools for the nf-core community.
Files for the main nf-core website >>>
Test data to be used for automated testing with the nf-core pipelines
Precision HLA typing from next-generation sequencing data
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel
Chromatin immunoprecipitation (ChIP-seq) analysis using BWA and MACS2 with QC steps.
WORK IN PROGRESS: Hopefully soon a fully reproducible and modern ancient DNA pipeline in Nextflow and with cloud support.
Exome Sequencing analysis pipeline (Work in progress)
Analysis pipeline for small-RNA sequencing data.
UNDER CONSTRUCTION: Assembly, binning and annotation of metagenomes.
DEPRECIATED! Please use nf-core/tools instead
contains logos for nf-core
Now replaced with a new website >>>