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A collection of high quality Nextflow pipelines

Pinned repositories

  1. Python package with helper tools for the nf-core community.

    Python 77 49

  2. RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control

    Nextflow 217 238

  3. RNA-seq analysis pipeline for detection gene-fusions

    Nextflow 49 34

  4. A fully reproducible and state of the art ancient DNA analysis pipeline

    Nextflow 34 32

  5. Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

    Nextflow 66 129

  6. ChIP-seq peak-calling, QC and differential analysis pipeline.

    Nextflow 58 63


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