From 5a3215f2dd08676bd516304b4bd8697c0cb7ad94 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn?= Date: Fri, 12 Apr 2024 18:28:31 +0200 Subject: [PATCH 1/2] Synchronize example samplesheets with the usage.md --- assets/samplesheet.csv | 14 +++++++------- 1 file changed, 7 insertions(+), 7 deletions(-) diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv index 3f30073d..cb938f19 100644 --- a/assets/samplesheet.csv +++ b/assets/samplesheet.csv @@ -1,8 +1,8 @@ sample,fastq_1,fastq_2,replicate -CONTROL,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz,1 -CONTROL,AEG588A2_S2_L002_R1_001.fastq.gz,AEG588A2_S2_L002_R2_001.fastq.gz,2 -CONTROL,AEG588A3_S3_L002_R1_001.fastq.gz,AEG588A3_S3_L002_R2_001.fastq.gz,3 -TREATMENT,AEG588A4_S4_L003_R1_001.fastq.gz,,1 -TREATMENT,AEG588A5_S5_L003_R1_001.fastq.gz,,2 -TREATMENT,AEG588A6_S6_L003_R1_001.fastq.gz,,3 -TREATMENT,AEG588A6_S6_L004_R1_001.fastq.gz,,3 +UNTREATED_A,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz,1 +UNTREATED_A,AEG588A2_S2_L002_R1_001.fastq.gz,AEG588A2_S2_L002_R2_001.fastq.gz,2 +UNTREATED_A,AEG588A3_S3_L002_R1_001.fastq.gz,AEG588A3_S3_L002_R2_001.fastq.gz,3 +TREATED_A,AEG588A4_S4_L003_R1_001.fastq.gz,,1 +TREATED_A,AEG588A5_S5_L003_R1_001.fastq.gz,,2 +TREATED_A,AEG588A6_S6_L003_R1_001.fastq.gz,,3 +TREATED_A,AEG588A6_S6_L004_R1_001.fastq.gz,,3 From e69f5dcb046a71d49d0f810a5a05904ab434ecfd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Bj=C3=B6rn=20Langer?= <61791748+bjlang@users.noreply.github.com> Date: Mon, 10 Jun 2024 15:11:42 +0200 Subject: [PATCH 2/2] Synchronize README.md with usage.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 46e8a216..566f8ca6 100644 --- a/README.md +++ b/README.md @@ -83,9 +83,9 @@ To run on your data, prepare a tab-separated samplesheet with your input data. P ```csv sample,fastq_1,fastq_2,replicate -CONTROL,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz,1 -CONTROL,AEG588A1_S1_L003_R1_001.fastq.gz,AEG588A1_S1_L003_R2_001.fastq.gz,2 -CONTROL,AEG588A1_S1_L004_R1_001.fastq.gz,AEG588A1_S1_L004_R2_001.fastq.gz,3 +SAMPLE_A,AEG588A1_S1_L002_R1_001.fastq.gz,AEG588A1_S1_L002_R2_001.fastq.gz,1 +SAMPLE_A,AEG588A1_S1_L003_R1_001.fastq.gz,AEG588A1_S1_L003_R2_001.fastq.gz,2 +SAMPLE_A,AEG588A1_S1_L004_R1_001.fastq.gz,AEG588A1_S1_L004_R2_001.fastq.gz,3 ``` Now, you can run the pipeline using: