The nf-core/coproid pipeline comes with documentation about the pipeline, found in the
- Pipeline configuration
- Running the pipeline
- Output and how to interpret the results
CoproID helps you to identify the "true maker" of a sequenced Coprolite by checking the microbiome composition and the endogenous DNA.
The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.
nf-core/coproid was originally written by Maxime Borry.