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Coprolite host Identification pipeline
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README.md

Build Status Nextflow install with bioconda Docker Documentation Status

logo_coproid logo_nf_core

Documentation

The nf-core/coproid pipeline comes with documentation about the pipeline, found in the docs/ directory:

  1. Installation
  2. Pipeline configuration
  3. Running the pipeline
  4. Output and how to interpret the results
  5. Troubleshooting

Introduction

CoproID helps you to identify the "true maker" of a sequenced Coprolite by checking the microbiome composition and the endogenous DNA.

The pipeline is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It comes with docker containers making installation trivial and results highly reproducible.

Credits

nf-core/coproid was originally written by Maxime Borry.

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