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v2.1.0 - Jamon Salas
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@LaurenceKuhl LaurenceKuhl released this 14 Nov 12:59
· 619 commits to master since this release
2.1.0
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Learn about vigilant mode.

v2.1.0 - Jamon Salas - [14.11.2023]

Highlights 🌟

This release includes new and improved documentation and reporting as well as a new analysis module for CRISPR/Cas9 screening : BAGEL2. The screening pipeline also now supports paired-end data.

Added ➕

  • BAGEL2 modules which detect gene essentiality (#60)
  • nf-validation
  • New plots in the MultiQC for targeted screening (cutadapt module, read processing, edition, edition QC) (#74)

Fixed 🧰

  • Change to process_high for the mageck mle module (#60)
  • Fix paired-end samplesheet file for screening (#60)
  • Summary processes don't modify the input file anymore, allowing resuming these processes (#66)
  • Do not stash unexistent files, use empty lists instead. Fixes AWS tests (#67)
  • Rename process merging_summary to preprocessing_summary to improve clarity (#69)
  • Fix modules BWA_INDEX and BOWTIE2_BUILD after module update, new versions accept a meta map (#76)
  • Update targeted metromap (#78)
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