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@apeltzer apeltzer released this 13 Aug 19:51
· 153 commits to master since this release
1.5.0
512ea7e
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1.5.0 - 2024-08-12

Added

  • #202 Added cellranger mkfastq subworkflow for demultiplexing 10x samples.
  • #206 Add test with uncompressed data.
  • #208 Added parameter for removing adapter information from samplesheets.
  • #210 Add checkqc module.
  • #212 Added resource setting arguments to mkfastq module to work with github CI.
  • #214 Added test_pe (paired end) profile.
  • #220 Added kraken2.
  • #221 Added checkqc_config to pipeline schema.
  • #225 Added test profile for multi-lane samples, updated handling of such samples and adapter trimming.
  • #234 Added module for samplesheet validation.
  • #236 Add samplesheet generation.

Changed

  • #204 Update to latest bcl_demultiplex sub workflow.
  • #210 Update bcl2fastq and bcl_demultiplex.
  • #214 Updated method for removing adapters from samplesheet, added custom AdapterRemover function.
  • #210 Update bcl2fastq and bcl_demultiplex.
  • #216 List fastq reports for R1 and R2 separately in multiqc report.
  • #219 Modified workflow to store samplesheet in results folder.
  • #217 Update all nf-core modules and tests.
  • #240 Updated samshee, stub script and error strategy

Fixed

  • #224 Fix input filename collision.
  • #231 Fix checkqc error message and .command.log emission.
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