v1.4.0 - 2023-11-27

This PR contains a particularly important fix in #20, which resolves a long-standing issue in proper usage of abundance values from the rnaseq workflow. Users can now take the lengths from that workflow (using rnaseq >=v3.13.2) and pass them to this workflow to account for transcript length biases across samples.

What's Changed

• Post 1.3.1 release changes by @pinin4fjords in #186
• Fix sample metadata table in the html report not paginating by @davidecarlson in #195
• Fix GSEA indent in report by @WackerO in #190
• Add optional scree plot to report by @WackerO in #192
• Enable all genes for exploratory by @WackerO in #188
• Add DESeq text to report by @WackerO in #193
• Added colors to volcano by @WackerO in #194
• Document correct RNAseq matrix usage by @pinin4fjords in #200
• Update DESeq2/Limma by @WackerO in #201
• Add design to report by @WackerO in #189
• Transcript lengths for DESeq2 by @pinin4fjords in #203
• Release v1.4.0 by @pinin4fjords in #204
• V1.4.0 fixes by @pinin4fjords in #206
• Dev -> master for v1.4.0 by @pinin4fjords in #205

New Contributors

• @davidecarlson made their first contribution in #195

Full Changelog: 1.3.1...1.4.0