Nextflow workflow report

[hungry_carson]

Error executing process > 'fastqc_after_clipping (EXB015.A1701_S0_L003_R1_001.combined.prefixed.fq)'

Caused by:
  Process `fastqc_after_clipping (EXB015.A1701_S0_L003_R1_001.combined.prefixed.fq)` terminated with an error exit status (127)

Command executed:

  fastqc -q EXB015.A1701_S0_L003_R1_001.combined.prefixed.fq.gz

Command exit status:
  127

Command output:
  (empty)

Command error:
  java: symbol lookup error: /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.0.0-a95ee9548e4a04d99b07955eabaa0afe/jre/lib/amd64/../../../lib/libfontconfig.so.1: undefined symbol: FT_Done_MM_Var

Work dir:
  /projects1/users/fellows/nextflow/eager2/my_test/work/2c/d878226598b1556ba2bc80cdcd6c1e

Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`

Run times

Thu Oct 18 09:50:36 CEST 2018 - Thu Oct 18 09:53:15 CEST 2018 (duration: 2m 39s)

  10 succeeded  

  0 cached  

  4 ignored  

  4 failed  

Nextflow command

nextflow run nf-core/eager --reads EXB015.A1701/*_R{1,2}*fastq.gz --pairedEnd --fasta /projects1/Reference_Genomes/Human/HG19/hg19_MT.fasta -profile standard,conda --max_cpus 4 --max_memory 32G

CPU-Hours

(a few seconds)

Launch directory

/projects1/users/fellows/nextflow/eager2/my_test

Work directory

/projects1/users/fellows/nextflow/eager2/my_test/work

Project directory

/projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager

Script name

main.nf

Script ID

b830dc186a77957a7b56fd9b3a6233ea

Workflow session

934ca902-b970-4266-adc0-fe25fb4d9774

Workflow repository

https://github.com/nf-core/eager.git, revision master (commit hash 897fca777aa79e35f555fec17bb836ffd1d57053)

Workflow profile

standard,conda

Workflow container

nfcore/eager:2.0.0

Container engine

-

Nextflow version

version 0.32.0, build 4897 (27-09-2018 10:17 UTC)