Oct-24 10:33:07.096 [main] DEBUG nextflow.cli.Launcher - $> /projects1/clusterhomes/fellows/.local/bin/nextflow run nf-core/eager --reads EXB015.A1701/*_R{1,2}*fastq.gz --pairedEnd --fasta hg19_MT.fasta -profile standard,conda --max_cpus 4 --max_memory 32G -r dev
Oct-24 10:33:07.267 [main] INFO  nextflow.cli.CmdRun - N E X T F L O W  ~  version 0.32.0
Oct-24 10:33:07.401 [main] INFO  nextflow.cli.CmdRun - Pulling nf-core/eager ...
Oct-24 10:33:07.403 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/nf-core/eager/contents/nextflow.config
Oct-24 10:33:08.824 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/nf-core/eager/contents/main.nf
Oct-24 10:33:09.200 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/nf-core/eager
Oct-24 10:33:09.397 [main] DEBUG nextflow.scm.AssetManager - Pulling nf-core/eager -- Using remote clone url: https://github.com/nf-core/eager.git
Oct-24 10:33:10.970 [main] INFO  nextflow.cli.CmdRun -  downloaded from https://github.com/nf-core/eager.git
Oct-24 10:33:11.250 [main] DEBUG nextflow.scm.AssetManager - Git config: /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/.git/config; branch: master; remote: origin; url: https://github.com/nf-core/eager.git
Oct-24 10:33:11.251 [main] INFO  nextflow.cli.CmdRun - Launching `nf-core/eager` [pensive_stonebraker] - revision: c39cc07a43 [dev]
Oct-24 10:33:11.265 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/nextflow.config
Oct-24 10:33:11.266 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/nextflow.config
Oct-24 10:33:11.275 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard,conda`
Oct-24 10:33:11.598 [main] DEBUG nextflow.config.ConfigBuilder - Available config profiles: [standard, cfc, uzh, debug, test, conda, singularity, awsbatch, none, docker, binac]
Oct-24 10:33:11.637 [main] DEBUG nextflow.Session - Session uuid: b761e0be-1863-4cf3-b89c-6e764e39e0c2
Oct-24 10:33:11.637 [main] DEBUG nextflow.Session - Run name: pensive_stonebraker
Oct-24 10:33:11.637 [main] DEBUG nextflow.Session - Executor pool size: 32
Oct-24 10:33:11.646 [main] DEBUG nextflow.cli.CmdRun - 
  Version: 0.32.0 build 4897
  Modified: 27-09-2018 10:17 UTC (12:17 CEST)
  System: Linux 4.4.0-38-generic
  Runtime: Groovy 2.5.1 on Java HotSpot(TM) 64-Bit Server VM 1.8.0_74-b02
  Encoding: UTF-8 (UTF-8)
  Process: 156619@mpi-sdag1 [172.20.102.80]
  CPUs: 32 - Mem: 125.8 GB (102.5 GB) - Swap: 952 MB (777.4 MB)
Oct-24 10:33:11.658 [main] DEBUG nextflow.Session - Work-dir: /projects1/users/fellows/nextflow/eager2/my_test/work [gpfs]
Oct-24 10:33:11.794 [main] DEBUG nextflow.Session - Session start invoked
Oct-24 10:33:11.801 [main] DEBUG nextflow.processor.TaskDispatcher - Dispatcher > start
Oct-24 10:33:11.801 [main] DEBUG nextflow.trace.TraceFileObserver - Flow starting -- trace file: /projects1/users/fellows/nextflow/eager2/my_test/results/pipeline_info/nf-core/eager_trace.txt
Oct-24 10:33:11.804 [main] DEBUG nextflow.script.ScriptRunner - > Script parsing
Oct-24 10:33:12.474 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution
Oct-24 10:33:12.597 [main] WARN  nextflow.script.ScriptBinding - Access to undefined parameter `readPaths` -- Initialise it to a default value eg. `params.readPaths = some_value`
Oct-24 10:33:12.600 [main] DEBUG nextflow.file.PathVisitor - files for syntax: glob; folder: EXB015.A1701/; pattern: *_R{1,2}*fastq.gz; options: [:]
Oct-24 10:33:12.625 [main] INFO  nextflow.Nextflow - =========================================
Oct-24 10:33:12.625 [main] INFO  nextflow.Nextflow -  nf-core/eager v2.0.0dev
Oct-24 10:33:12.625 [main] INFO  nextflow.Nextflow - =========================================
Oct-24 10:33:12.631 [main] INFO  nextflow.Nextflow - Pipeline Name  : nf-core/eager
Pipeline Version: 2.1.0dev
Run Name       : pensive_stonebraker
Reads          : EXB015.A1701/*_R{1,2}*fastq.gz
Fasta Ref      : hg19_MT.fasta
Data Type      : Paired-End
Max Memory     : 32G
Max CPUs       : 4
Max Time       : 10d
Output dir     : ./results
Working dir    : /projects1/users/fellows/nextflow/eager2/my_test/work
Container Engine: null
Current home   : /projects1/clusterhomes/fellows
Current user   : fellows
Current path   : /projects1/users/fellows/nextflow/eager2/my_test
Script dir     : /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager
Config Profile : standard,conda
Oct-24 10:33:12.632 [main] INFO  nextflow.Nextflow - =========================================
Oct-24 10:33:12.690 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:get_software_versions` matches process get_software_versions
Oct-24 10:33:12.693 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.693 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.700 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.702 [main] INFO  nextflow.executor.Executor - [warm up] executor > local
Oct-24 10:33:12.705 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=32; memory=125.8 GB; capacity=32; pollInterval=100ms; dumpInterval=5m
Oct-24 10:33:12.709 [main] DEBUG nextflow.processor.TaskDispatcher - Starting monitor: LocalPollingMonitor
Oct-24 10:33:12.710 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local)
Oct-24 10:33:12.712 [main] DEBUG nextflow.executor.Executor - Invoke register for executor: local
Oct-24 10:33:12.756 [main] DEBUG nextflow.Session - >>> barrier register (process: get_software_versions)
Oct-24 10:33:12.759 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > get_software_versions -- maxForks: 32
Oct-24 10:33:12.812 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.813 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.813 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.814 [main] DEBUG nextflow.Session - >>> barrier register (process: makeBWAIndex)
Oct-24 10:33:12.817 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > makeBWAIndex -- maxForks: 32
Oct-24 10:33:12.832 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.832 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.833 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.834 [main] DEBUG nextflow.Session - >>> barrier register (process: makeFastaIndex)
Oct-24 10:33:12.835 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > makeFastaIndex -- maxForks: 32
Oct-24 10:33:12.842 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.843 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.843 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.845 [main] DEBUG nextflow.Session - >>> barrier register (process: makeSeqDict)
Oct-24 10:33:12.846 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > makeSeqDict -- maxForks: 32
Oct-24 10:33:12.866 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:fastqc` matches process fastqc
Oct-24 10:33:12.867 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.867 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.867 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.868 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc)
Oct-24 10:33:12.868 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc -- maxForks: 32
Oct-24 10:33:12.916 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.917 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.917 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.918 [main] DEBUG nextflow.Session - >>> barrier register (process: fastp)
Oct-24 10:33:12.918 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastp -- maxForks: 32
Oct-24 10:33:12.929 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.929 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.929 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.930 [main] DEBUG nextflow.Session - >>> barrier register (process: adapter_removal)
Oct-24 10:33:12.933 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > adapter_removal -- maxForks: 32
Oct-24 10:33:12.935 [Actor Thread 1] DEBUG nextflow.Session - <<< barrier arrive (process: fastp)
Oct-24 10:33:12.942 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.942 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.942 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.944 [main] DEBUG nextflow.Session - >>> barrier register (process: fastqc_after_clipping)
Oct-24 10:33:12.945 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > fastqc_after_clipping -- maxForks: 32
Oct-24 10:33:12.952 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:bwa` matches process bwa
Oct-24 10:33:12.953 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.953 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.953 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.955 [main] DEBUG nextflow.Session - >>> barrier register (process: bwa)
Oct-24 10:33:12.955 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwa -- maxForks: 32
Oct-24 10:33:12.962 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.963 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.963 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.963 [main] DEBUG nextflow.Session - >>> barrier register (process: circulargenerator)
Oct-24 10:33:12.963 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > circulargenerator -- maxForks: 32
Oct-24 10:33:12.969 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.969 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.969 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.970 [Actor Thread 21] DEBUG nextflow.Session - <<< barrier arrive (process: circulargenerator)
Oct-24 10:33:12.970 [Actor Thread 10] INFO  nextflow.conda.CondaCache - Creating Conda env: /projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/environment.yml [cache /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.1.0dev-1e0b9504613a8f901d11b4afba22a701]
Oct-24 10:33:12.970 [main] DEBUG nextflow.Session - >>> barrier register (process: circularmapper)
Oct-24 10:33:12.970 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > circularmapper -- maxForks: 32
Oct-24 10:33:12.975 [Actor Thread 21] DEBUG nextflow.Session - <<< barrier arrive (process: circularmapper)
Oct-24 10:33:12.978 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:12.979 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:12.979 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:12.981 [main] DEBUG nextflow.Session - >>> barrier register (process: bwamem)
Oct-24 10:33:12.981 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bwamem -- maxForks: 32
Oct-24 10:33:13.099 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.100 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.100 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.101 [main] DEBUG nextflow.Session - >>> barrier register (process: samtools_idxstats)
Oct-24 10:33:13.101 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > samtools_idxstats -- maxForks: 32
Oct-24 10:33:13.108 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.108 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.108 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.109 [main] DEBUG nextflow.Session - >>> barrier register (process: samtools_filter)
Oct-24 10:33:13.109 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > samtools_filter -- maxForks: 32
Oct-24 10:33:13.114 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.115 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.115 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.115 [main] DEBUG nextflow.Session - >>> barrier register (process: dedup)
Oct-24 10:33:13.115 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > dedup -- maxForks: 32
Oct-24 10:33:13.119 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:preseq` matches process preseq
Oct-24 10:33:13.120 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.120 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.121 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.123 [main] DEBUG nextflow.Session - >>> barrier register (process: preseq)
Oct-24 10:33:13.123 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > preseq -- maxForks: 32
Oct-24 10:33:13.129 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.129 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.129 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.130 [main] DEBUG nextflow.Session - >>> barrier register (process: damageprofiler)
Oct-24 10:33:13.130 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > damageprofiler -- maxForks: 32
Oct-24 10:33:13.135 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.136 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.136 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.136 [main] DEBUG nextflow.Session - >>> barrier register (process: qualimap)
Oct-24 10:33:13.136 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > qualimap -- maxForks: 32
Oct-24 10:33:13.141 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.141 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.141 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.141 [main] DEBUG nextflow.Session - >>> barrier register (process: markDup)
Oct-24 10:33:13.141 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > markDup -- maxForks: 32
Oct-24 10:33:13.149 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.149 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.149 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.149 [main] DEBUG nextflow.Session - >>> barrier register (process: pmdtools)
Oct-24 10:33:13.150 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > pmdtools -- maxForks: 32
Oct-24 10:33:13.154 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.154 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.154 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.155 [main] DEBUG nextflow.Session - >>> barrier register (process: bam_trim)
Oct-24 10:33:13.155 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > bam_trim -- maxForks: 32
Oct-24 10:33:13.178 [main] DEBUG nextflow.util.CacheHelper - Config settings `withName:multiqc` matches process multiqc
Oct-24 10:33:13.179 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.179 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.179 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.180 [main] DEBUG nextflow.Session - >>> barrier register (process: multiqc)
Oct-24 10:33:13.181 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > multiqc -- maxForks: 32
Oct-24 10:33:13.184 [main] DEBUG nextflow.processor.ProcessFactory - << taskConfig executor: null
Oct-24 10:33:13.184 [main] DEBUG nextflow.processor.ProcessFactory - >> processorType: 'local'
Oct-24 10:33:13.184 [main] DEBUG nextflow.executor.Executor - Initializing executor: local
Oct-24 10:33:13.185 [main] DEBUG nextflow.Session - >>> barrier register (process: output_documentation)
Oct-24 10:33:13.185 [main] DEBUG nextflow.processor.TaskProcessor - Creating operator > output_documentation -- maxForks: 32
Oct-24 10:33:13.186 [main] DEBUG nextflow.script.ScriptRunner - > Await termination 
Oct-24 10:33:13.186 [main] DEBUG nextflow.Session - Session await
Oct-24 10:34:40.267 [Actor Thread 10] DEBUG nextflow.conda.CondaCache - Conda create complete env=/projects1/clusterhomes/fellows/.nextflow/assets/nf-core/eager/environment.yml path=/projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.1.0dev-1e0b9504613a8f901d11b4afba22a701
Oct-24 10:34:40.366 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.371 [Task submitter] INFO  nextflow.Session - [b4/cb5381] Submitted process > get_software_versions
Oct-24 10:34:40.398 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.398 [Task submitter] INFO  nextflow.Session - [e4/ed3aeb] Submitted process > fastqc (EXB015.A1701_S0_L004)
Oct-24 10:34:40.410 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.411 [Task submitter] INFO  nextflow.Session - [b1/398561] Submitted process > fastqc (EXB015.A1701_S0_L003)
Oct-24 10:34:40.425 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.426 [Task submitter] INFO  nextflow.Session - [fd/fbbe81] Submitted process > fastqc (EXB015.A1701_S0_L002)
Oct-24 10:34:40.434 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.434 [Task submitter] INFO  nextflow.Session - [74/ed08ed] Submitted process > adapter_removal (EXB015.A1701_S0_L003)
Oct-24 10:34:40.442 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.442 [Task submitter] INFO  nextflow.Session - [68/0a68fd] Submitted process > adapter_removal (EXB015.A1701_S0_L001)
Oct-24 10:34:40.450 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.451 [Task submitter] INFO  nextflow.Session - [5f/a845bc] Submitted process > adapter_removal (EXB015.A1701_S0_L004)
Oct-24 10:34:40.458 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.459 [Task submitter] INFO  nextflow.Session - [ef/0628ed] Submitted process > fastqc (EXB015.A1701_S0_L001)
Oct-24 10:34:40.468 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.468 [Task submitter] INFO  nextflow.Session - [1f/0facb3] Submitted process > makeFastaIndex (hg19_MT.fasta)
Oct-24 10:34:40.475 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.476 [Task submitter] INFO  nextflow.Session - [53/84c9a4] Submitted process > makeSeqDict (hg19_MT.fasta)
Oct-24 10:34:40.482 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.483 [Task submitter] INFO  nextflow.Session - [63/e0b7b0] Submitted process > adapter_removal (EXB015.A1701_S0_L002)
Oct-24 10:34:40.489 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.489 [Task submitter] INFO  nextflow.Session - [e3/6b9203] Submitted process > makeBWAIndex (hg19_MT.fasta)
Oct-24 10:34:40.495 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:40.496 [Task submitter] INFO  nextflow.Session - [46/bd27c5] Submitted process > output_documentation
Oct-24 10:34:43.568 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: makeFastaIndex (hg19_MT.fasta); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/1f/0facb301ef1fc3390480fe58b776d3]
Oct-24 10:34:43.584 [Actor Thread 21] DEBUG nextflow.Session - <<< barrier arrive (process: makeFastaIndex)
Oct-24 10:34:53.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: fastqc (EXB015.A1701_S0_L003); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/b1/398561a33a7e7d168bc88fc6072c26]
Oct-24 10:34:53.830 [Task monitor] INFO  nextflow.processor.TaskProcessor - [b1/398561] NOTE: Process `fastqc (EXB015.A1701_S0_L003)` terminated with an error exit status (127) -- Error is ignored
Oct-24 10:34:53.924 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: fastqc (EXB015.A1701_S0_L004); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/e4/ed3aeb52097eb3ebfb056ed4fec2bf]
Oct-24 10:34:53.925 [Task monitor] INFO  nextflow.processor.TaskProcessor - [e4/ed3aeb] NOTE: Process `fastqc (EXB015.A1701_S0_L004)` terminated with an error exit status (127) -- Error is ignored
Oct-24 10:34:53.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: fastqc (EXB015.A1701_S0_L002); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/fd/fbbe81beba03e94d3f823f45de0766]
Oct-24 10:34:53.970 [Task monitor] INFO  nextflow.processor.TaskProcessor - [fd/fbbe81] NOTE: Process `fastqc (EXB015.A1701_S0_L002)` terminated with an error exit status (127) -- Error is ignored
Oct-24 10:34:55.468 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: makeBWAIndex (hg19_MT.fasta); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/e3/6b92031713b633689ca1de15e5fde5]
Oct-24 10:34:55.478 [Actor Thread 21] DEBUG nextflow.Session - <<< barrier arrive (process: makeBWAIndex)
Oct-24 10:34:55.700 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: adapter_removal (EXB015.A1701_S0_L001); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/68/0a68fd7e18650be8fb8455ff4ebd91]
Oct-24 10:34:55.708 [Actor Thread 25] DEBUG nextflow.Session - <<< barrier arrive (process: bwamem)
Oct-24 10:34:55.709 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 14; name: adapter_removal (EXB015.A1701_S0_L004); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/5f/a845bc6615975b54b463862702a8fd]
Oct-24 10:34:55.715 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:55.720 [Task submitter] INFO  nextflow.Session - [86/100293] Submitted process > fastqc_after_clipping (EXB015.A1701_S0_L001_R1_001.combined.prefixed.fq)
Oct-24 10:34:55.729 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:55.730 [Task submitter] INFO  nextflow.Session - [d3/cd7e4a] Submitted process > bwa (EXB015.A1701_S0_L001_R1_001)
Oct-24 10:34:55.734 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: output_documentation; status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/46/bd27c5bca506aa3940da439f19967a]
Oct-24 10:34:55.735 [Actor Thread 31] DEBUG nextflow.Session - <<< barrier arrive (process: output_documentation)
Oct-24 10:34:55.746 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:55.746 [Task submitter] INFO  nextflow.Session - [9c/698004] Submitted process > fastqc_after_clipping (EXB015.A1701_S0_L004_R1_001.combined.prefixed.fq)
Oct-24 10:34:55.799 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: get_software_versions; status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/b4/cb5381dfac67b7145340f504f51015]
Oct-24 10:34:55.801 [Actor Thread 31] DEBUG nextflow.Session - <<< barrier arrive (process: get_software_versions)
Oct-24 10:34:55.803 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: adapter_removal (EXB015.A1701_S0_L003); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/74/ed08ed376c8c01949e16bbf82367ea]
Oct-24 10:34:55.813 [Task submitter] DEBUG nextflow.executor.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run
Oct-24 10:34:55.814 [Task submitter] INFO  nextflow.Session - [2d/1d10d8] Submitted process > fastqc_after_clipping (EXB015.A1701_S0_L003_R1_001.combined.prefixed.fq)
Oct-24 10:35:00.753 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: fastqc (EXB015.A1701_S0_L001); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/ef/0628edbd9041d49dd4b3f7e915171f]
Oct-24 10:35:00.754 [Task monitor] INFO  nextflow.processor.TaskProcessor - [ef/0628ed] NOTE: Process `fastqc (EXB015.A1701_S0_L001)` terminated with an error exit status (127) -- Error is ignored
Oct-24 10:35:00.755 [Actor Thread 31] DEBUG nextflow.Session - <<< barrier arrive (process: fastqc)
Oct-24 10:35:00.791 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: makeSeqDict (hg19_MT.fasta); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/53/84c9a4bc55e2edac8386326178f579]
Oct-24 10:35:00.795 [Actor Thread 31] DEBUG nextflow.Session - <<< barrier arrive (process: makeSeqDict)
Oct-24 10:35:04.260 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 21; name: fastqc_after_clipping (EXB015.A1701_S0_L001_R1_001.combined.prefixed.fq); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/86/1002935c45ff098bb7be38054199b8]
Oct-24 10:35:04.302 [Task monitor] ERROR nextflow.processor.TaskProcessor - Error executing process > 'fastqc_after_clipping (EXB015.A1701_S0_L001_R1_001.combined.prefixed.fq)'

Caused by:
  Process `fastqc_after_clipping (EXB015.A1701_S0_L001_R1_001.combined.prefixed.fq)` terminated with an error exit status (127)

Command executed:

  fastqc -q EXB015.A1701_S0_L001_R1_001.combined.prefixed.fq.gz

Command exit status:
  127

Command output:
  (empty)

Command error:
  java: symbol lookup error: /projects1/users/fellows/nextflow/eager2/my_test/work/conda/nf-core-eager-2.1.0dev-1e0b9504613a8f901d11b4afba22a701/jre/lib/amd64/../../../lib/libfontconfig.so.1: undefined symbol: FT_Done_MM_Var

Work dir:
  /projects1/users/fellows/nextflow/eager2/my_test/work/86/1002935c45ff098bb7be38054199b8

Tip: when you have fixed the problem you can continue the execution appending to the nextflow command line the option `-resume`
Oct-24 10:35:04.307 [Task monitor] INFO  nextflow.Session - Execution cancelled -- Finishing pending tasks before exit
Oct-24 10:35:04.319 [main] DEBUG nextflow.Session - Session await > all process finished
Oct-24 10:35:04.326 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 20; name: bwa (EXB015.A1701_S0_L001_R1_001); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/d3/cd7e4ab964f1ba491e9828dcaf4422]
Oct-24 10:35:04.335 [Actor Thread 31] DEBUG nextflow.Session - <<< barrier arrive (process: bwa)
Oct-24 10:35:04.338 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 22; name: fastqc_after_clipping (EXB015.A1701_S0_L004_R1_001.combined.prefixed.fq); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/9c/698004694fc08d93295db0891ac37f]
Oct-24 10:35:04.428 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 23; name: fastqc_after_clipping (EXB015.A1701_S0_L003_R1_001.combined.prefixed.fq); status: COMPLETED; exit: 127; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/2d/1d10d8da81901040e5db0789fcbbf9]
Oct-24 10:35:05.877 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 15; name: adapter_removal (EXB015.A1701_S0_L002); status: COMPLETED; exit: 0; error: -; workDir: /projects1/users/fellows/nextflow/eager2/my_test/work/63/e0b7b0f33d297dc8f9074bb3e13f30]
Oct-24 10:35:05.884 [Actor Thread 21] DEBUG nextflow.Session - <<< barrier arrive (process: adapter_removal)
Oct-24 10:35:05.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local)
Oct-24 10:35:05.886 [main] DEBUG nextflow.Session - Session await > all barriers passed
Oct-24 10:35:05.961 [main] INFO  nextflow.Nextflow - [nf-core/eager] Pipeline Complete
Oct-24 10:35:05.971 [main] DEBUG nextflow.trace.StatsObserver - Workflow completed > WorkflowStats[succeedCount=10; failedCount=3; ignoredCount=4; cachedCount=0; succeedDuration=1m 4s; failedDuration=30.4s; cachedDuration=0ms]
Oct-24 10:35:05.972 [main] DEBUG nextflow.trace.TraceFileObserver - Flow completing -- flushing trace file
Oct-24 10:35:05.975 [main] DEBUG nextflow.trace.ReportObserver - Flow completing -- rendering html report
Oct-24 10:35:06.043 [main] DEBUG nextflow.trace.ReportObserver - Execution report summary data:
  {"makeFastaIndex":{"cpu":null,"mem":null,"time":{"mean":62,"min":62,"q1":62,"q2":62,"q3":62,"max":62,"minLabel":"makeFastaIndex (hg19_MT.fasta)","maxLabel":"makeFastaIndex (hg19_MT.fasta)","q1Label":"makeFastaIndex (hg19_MT.fasta)","q2Label":"makeFastaIndex (hg19_MT.fasta)","q3Label":"makeFastaIndex (hg19_MT.fasta)"},"reads":null,"writes":null,"cpuUsage":null,"memUsage":null,"timeUsage":null},"output_documentation":{"cpu":{"mean":27.1,"min":27.1,"q1":27.1,"q2":27.1,"q3":27.1,"max":27.1,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"},"mem":{"mean":190631936,"min":190631936,"q1":190631936,"q2":190631936,"q3":190631936,"max":190631936,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"},"time":{"mean":7447,"min":7447,"q1":7447,"q2":7447,"q3":7447,"max":7447,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"},"reads":null,"writes":null,"cpuUsage":{"mean":27.1,"min":27.1,"q1":27.1,"q2":27.1,"q3":27.1,"max":27.1,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"},"memUsage":{"mean":2.22,"min":2.22,"q1":2.22,"q2":2.22,"q3":2.22,"max":2.22,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"},"timeUsage":{"mean":0.1,"min":0.1,"q1":0.1,"q2":0.1,"q3":0.1,"max":0.1,"minLabel":"output_documentation","maxLabel":"output_documentation","q1Label":"output_documentation","q2Label":"output_documentation","q3Label":"output_documentation"}},"fastqc":{"cpu":{"mean":391.13,"min":325.9,"q1":378.63,"q2":399.7,"q3":412.2,"max":439.2,"minLabel":"fastqc (EXB015.A1701_S0_L003)","maxLabel":"fastqc (EXB015.A1701_S0_L001)","q1Label":"fastqc (EXB015.A1701_S0_L003)","q2Label":"fastqc (EXB015.A1701_S0_L002)","q3Label":"fastqc (EXB015.A1701_S0_L004)"},"mem":{"mean":3503964160,"min":3402563584,"q1":3503964160,"q2":3537764352,"q3":3537764352,"max":3537764352,"minLabel":"fastqc (EXB015.A1701_S0_L001)","maxLabel":"fastqc (EXB015.A1701_S0_L002)","q1Label":"fastqc (EXB015.A1701_S0_L001)","q2Label":"fastqc (EXB015.A1701_S0_L003)","q3Label":"fastqc (EXB015.A1701_S0_L004)"},"time":{"mean":6522.25,"min":1942,"q1":6049,"q2":7540,"q3":8013.25,"max":9067,"minLabel":"fastqc (EXB015.A1701_S0_L001)","maxLabel":"fastqc (EXB015.A1701_S0_L004)","q1Label":"fastqc (EXB015.A1701_S0_L001)","q2Label":"fastqc (EXB015.A1701_S0_L002)","q3Label":"fastqc (EXB015.A1701_S0_L003)"},"reads":null,"writes":{"mean":118784,"min":32768,"q1":118784,"q2":147456,"q3":147456,"max":147456,"minLabel":"fastqc (EXB015.A1701_S0_L001)","maxLabel":"fastqc (EXB015.A1701_S0_L002)","q1Label":"fastqc (EXB015.A1701_S0_L001)","q2Label":"fastqc (EXB015.A1701_S0_L003)","q3Label":"fastqc (EXB015.A1701_S0_L004)"},"cpuUsage":{"mean":391.13,"min":325.9,"q1":378.63,"q2":399.7,"q3":412.2,"max":439.2,"minLabel":"fastqc (EXB015.A1701_S0_L003)","maxLabel":"fastqc (EXB015.A1701_S0_L001)","q1Label":"fastqc (EXB015.A1701_S0_L003)","q2Label":"fastqc (EXB015.A1701_S0_L002)","q3Label":"fastqc (EXB015.A1701_S0_L004)"},"memUsage":{"mean":40.79,"min":39.61,"q1":40.79,"q2":41.18,"q3":41.18,"max":41.18,"minLabel":"fastqc (EXB015.A1701_S0_L001)","maxLabel":"fastqc (EXB015.A1701_S0_L002)","q1Label":"fastqc (EXB015.A1701_S0_L001)","q2Label":"fastqc (EXB015.A1701_S0_L003)","q3Label":"fastqc (EXB015.A1701_S0_L004)"},"timeUsage":{"mean":0.09,"min":0.03,"q1":0.08,"q2":0.1,"q3":0.11,"max":0.13,"minLabel":"fastqc (EXB015.A1701_S0_L001)","maxLabel":"fastqc (EXB015.A1701_S0_L004)","q1Label":"fastqc (EXB015.A1701_S0_L001)","q2Label":"fastqc (EXB015.A1701_S0_L002)","q3Label":"fastqc (EXB015.A1701_S0_L003)"}},"adapter_removal":{"cpu":{"mean":101.6,"min":87.2,"q1":99.5,"q2":105.4,"q3":107.5,"max":108.4,"minLabel":"adapter_removal (EXB015.A1701_S0_L001)","maxLabel":"adapter_removal (EXB015.A1701_S0_L002)","q1Label":"adapter_removal (EXB015.A1701_S0_L001)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L003)"},"mem":{"mean":1461272576,"min":47464448,"q1":47464448,"q2":47464448,"q3":1461272576,"max":5702696960,"minLabel":"adapter_removal (EXB015.A1701_S0_L001)","maxLabel":"adapter_removal (EXB015.A1701_S0_L002)","q1Label":"adapter_removal (EXB015.A1701_S0_L001)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L003)"},"time":{"mean":9878.75,"min":6817,"q1":9709.75,"q2":10804,"q3":10973,"max":11090,"minLabel":"adapter_removal (EXB015.A1701_S0_L002)","maxLabel":"adapter_removal (EXB015.A1701_S0_L003)","q1Label":"adapter_removal (EXB015.A1701_S0_L002)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L001)"},"reads":null,"writes":{"mean":8192,"min":0,"q1":0,"q2":0,"q3":8192,"max":32768,"minLabel":"adapter_removal (EXB015.A1701_S0_L001)","maxLabel":"adapter_removal (EXB015.A1701_S0_L002)","q1Label":"adapter_removal (EXB015.A1701_S0_L001)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L003)"},"cpuUsage":{"mean":101.6,"min":87.2,"q1":99.5,"q2":105.4,"q3":107.5,"max":108.4,"minLabel":"adapter_removal (EXB015.A1701_S0_L001)","maxLabel":"adapter_removal (EXB015.A1701_S0_L002)","q1Label":"adapter_removal (EXB015.A1701_S0_L001)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L003)"},"memUsage":{"mean":17.01,"min":0.55,"q1":0.55,"q2":0.55,"q3":17.01,"max":66.39,"minLabel":"adapter_removal (EXB015.A1701_S0_L001)","maxLabel":"adapter_removal (EXB015.A1701_S0_L002)","q1Label":"adapter_removal (EXB015.A1701_S0_L001)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L003)"},"timeUsage":{"mean":0.14,"min":0.09,"q1":0.13,"q2":0.15,"q3":0.15,"max":0.15,"minLabel":"adapter_removal (EXB015.A1701_S0_L002)","maxLabel":"adapter_removal (EXB015.A1701_S0_L003)","q1Label":"adapter_removal (EXB015.A1701_S0_L002)","q2Label":"adapter_removal (EXB015.A1701_S0_L004)","q3Label":"adapter_removal (EXB015.A1701_S0_L001)"}},"makeBWAIndex":{"cpu":null,"mem":null,"time":{"mean":28,"min":28,"q1":28,"q2":28,"q3":28,"max":28,"minLabel":"makeBWAIndex (hg19_MT.fasta)","maxLabel":"makeBWAIndex (hg19_MT.fasta)","q1Label":"makeBWAIndex (hg19_MT.fasta)","q2Label":"makeBWAIndex (hg19_MT.fasta)","q3Label":"makeBWAIndex (hg19_MT.fasta)"},"reads":null,"writes":null,"cpuUsage":null,"memUsage":null,"timeUsage":null},"get_software_versions":{"cpu":{"mean":128.4,"min":128.4,"q1":128.4,"q2":128.4,"q3":128.4,"max":128.4,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"mem":{"mean":3601809408,"min":3601809408,"q1":3601809408,"q2":3601809408,"q3":3601809408,"max":3601809408,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"time":{"mean":11231,"min":11231,"q1":11231,"q2":11231,"q3":11231,"max":11231,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"reads":null,"writes":{"mean":65536,"min":65536,"q1":65536,"q2":65536,"q3":65536,"max":65536,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"cpuUsage":{"mean":128.4,"min":128.4,"q1":128.4,"q2":128.4,"q3":128.4,"max":128.4,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"memUsage":{"mean":167.72,"min":167.72,"q1":167.72,"q2":167.72,"q3":167.72,"max":167.72,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"},"timeUsage":{"mean":0.16,"min":0.16,"q1":0.16,"q2":0.16,"q3":0.16,"max":0.16,"minLabel":"get_software_versions","maxLabel":"get_software_versions","q1Label":"get_software_versions","q2Label":"get_software_versions","q3Label":"get_software_versions"}},"makeSeqDict":{"cpu":{"mean":208.4,"min":208.4,"q1":208.4,"q2":208.4,"q3":208.4,"max":208.4,"minLabel":"makeSeqDict (hg19_MT.fasta)","maxLabel":"makeSeqDict (hg19_MT.fasta)","q1Label":"makeSeqDict (hg19_MT.fasta)","q2Label":"makeSeqDict (hg19_MT.fasta)","q3Label":"makeSeqDict (hg19_MT.fasta)"},"mem":{"mean":5683113984,"min":5683113984,"q1":5683113984,"q2":5683113984,"q3":5683113984,"max":5683113984,"minLabel":"makeSeqDict (hg19_MT.fasta)","maxLabel":"makeSeqDict (hg19_MT.fasta)","q1Label":"makeSeqDict (hg19_MT.fasta)","q2Label":"makeSeqDict (hg19_MT.fasta)","q3Label":"makeSeqDict (hg19_MT.fasta)"},"time":{"mean":963,"min":963,"q1":963,"q2":963,"q3":963,"max":963,"minLabel":"makeSeqDict (hg19_MT.fasta)","maxLabel":"makeSeqDict (hg19_MT.fasta)","q1Label":"makeSeqDict (hg19_MT.fasta)","q2Label":"makeSeqDict (hg19_MT.fasta)","q3Label":"makeSeqDict (hg19_MT.fasta)"},"reads":null,"writes":{"mean":32768,"min":32768,"q1":32768,"q2":32768,"q3":32768,"max":32768,"minLabel":"makeSeqDict (hg19_MT.fasta)","maxLabel":"makeSeqDict (hg19_MT.fasta)","q1Label":"makeSeqDict (hg19_MT.fasta)","q2Label":"makeSeqDict 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Oct-24 10:35:06.673 [main] DEBUG nextflow.trace.TimelineObserver - Flow completing -- rendering html timeline
Oct-24 10:35:06.826 [main] WARN  nextflow.dag.GraphvizRenderer - To render the execution DAG in the required format it is required to install Graphviz -- See http://www.graphviz.org for more info.
Oct-24 10:35:06.843 [main] DEBUG nextflow.CacheDB - Closing CacheDB done
Oct-24 10:35:06.855 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye