From 159120750d4df687366fbd56a4d6d4d3ade98ae2 Mon Sep 17 00:00:00 2001
From: Ido Bar <IdoBar@users.noreply.github.com>
Date: Sat, 20 Mar 2021 15:04:51 +1000
Subject: [PATCH 1/3] Fix typo in UnifiedGenotyper IndelRealigner command

Changed {samplenane} to {samplename} (line 2337)
---
 main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/main.nf b/main.nf
index f3ad4b2a0..0594debc9 100644
--- a/main.nf
+++ b/main.nf
@@ -2334,7 +2334,7 @@ process genotyping_ug {
     """
     samtools index ${bam}
     gatk3 -T RealignerTargetCreator -R ${fasta} -I ${bam} -nt ${task.cpus} -o ${samplename}.intervals ${defaultbasequalities}
-    gatk3 -T IndelRealigner -R ${fasta} -I ${bam} -targetIntervals ${samplenane}.intervals -o ${samplename}.realign.bam ${defaultbasequalities}
+    gatk3 -T IndelRealigner -R ${fasta} -I ${bam} -targetIntervals ${samplename}.intervals -o ${samplename}.realign.bam ${defaultbasequalities}
     gatk3 -T UnifiedGenotyper -R ${fasta} -I ${samplename}.realign.bam -o ${samplename}.unifiedgenotyper.vcf -nt ${task.cpus} --dbsnp ${params.gatk_dbsnp} --genotype_likelihoods_model ${params.gatk_ug_genotype_model} -stand_call_conf ${params.gatk_call_conf} --sample_ploidy ${params.gatk_ploidy} -dcov ${params.gatk_downsample} --output_mode ${params.gatk_ug_out_mode} ${defaultbasequalities}
     
     $keep_realign

From a810c4548f81f34636f1992fc119e4b4008beb81 Mon Sep 17 00:00:00 2001
From: Ido Bar <IdoBar@users.noreply.github.com>
Date: Sat, 20 Mar 2021 15:09:14 +1000
Subject: [PATCH 2/3] Update CHANGELOG.md

---
 CHANGELOG.md | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 013927858..32f6c6524 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,18 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
+## [2.3.3] - 
+
+### `Added`
+
+### `Fixed`
+
+- [#707](https://github.com/nf-core/eager/pull/707) - Fix typo in UnifiedGenotyper IndelRealigner command
+
+### `Dependencies`
+
+### `Deprecated`
+
 ## [2.3.2] - 2021-03-16
 
 ### `Added`

From 14615f55ffa434aca0a58f51b23d2726dca150a9 Mon Sep 17 00:00:00 2001
From: Ido Bar <IdoBar@users.noreply.github.com>
Date: Sun, 21 Mar 2021 00:53:20 +1000
Subject: [PATCH 3/3] Update CHANGELOG.md

---
 CHANGELOG.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 32f6c6524..31a89da64 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.html).
 
-## [2.3.3] - 
+## [2.3.3]
 
 ### `Added`